1 | =============================================================== |
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2 | Blosc: A blocking, shuffling and lossless compression library |
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3 | =============================================================== |
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4 | |
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5 | :Author: Francesc Alted |
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6 | :Contact: [email protected] |
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7 | :URL: http://www.blosc.org |
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8 | |
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9 | What is it? |
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10 | =========== |
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11 | |
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12 | Blosc [1]_ is a high performance compressor optimized for binary data. |
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13 | It has been designed to transmit data to the processor cache faster |
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14 | than the traditional, non-compressed, direct memory fetch approach via |
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15 | a memcpy() OS call. Blosc is the first compressor (that I'm aware of) |
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16 | that is meant not only to reduce the size of large datasets on-disk or |
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17 | in-memory, but also to accelerate memory-bound computations. |
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18 | |
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19 | It uses the blocking technique (as described in [2]_) to reduce |
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20 | activity on the memory bus as much as possible. In short, this |
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21 | technique works by dividing datasets in blocks that are small enough |
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22 | to fit in caches of modern processors and perform compression / |
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23 | decompression there. It also leverages, if available, SIMD |
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24 | instructions (SSE2) and multi-threading capabilities of CPUs, in order |
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25 | to accelerate the compression / decompression process to a maximum. |
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26 | |
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27 | You can see some recent benchmarks about Blosc performance in [3]_ |
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28 | |
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29 | Blosc is distributed using the MIT license, see LICENSES/BLOSC.txt for |
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30 | details. |
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31 | |
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32 | .. [1] http://www.blosc.org |
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33 | .. [2] http://blosc.org/docs/StarvingCPUs-CISE-2010.pdf |
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34 | .. [3] http://blosc.org/trac/wiki/SyntheticBenchmarks |
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35 | |
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36 | Meta-compression and other advantages over existing compressors |
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37 | =============================================================== |
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38 | |
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39 | Blosc is not like other compressors: it should rather be called a |
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40 | meta-compressor. This is so because it can use different compressors |
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41 | and pre-conditioners (programs that generally improve compression |
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42 | ratio). At any rate, it can also be called a compressor because it |
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43 | happens that it already integrates one compressor and one |
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44 | pre-conditioner, so it can actually work like so. |
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45 | |
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46 | Currently it uses BloscLZ, a compressor heavily based on FastLZ |
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47 | (http://fastlz.org/), and a highly optimized (it can use SSE2 |
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48 | instructions, if available) Shuffle pre-conditioner. However, |
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49 | different compressors or pre-conditioners may be added in the future. |
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50 | |
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51 | Blosc is in charge of coordinating the compressor and pre-conditioners |
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52 | so that they can leverage the blocking technique (described above) as |
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53 | well as multi-threaded execution (if several cores are available) |
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54 | automatically. That makes that every compressor and pre-conditioner |
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55 | will work at very high speeds, even if it was not initially designed |
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56 | for doing blocking or multi-threading. |
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57 | |
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58 | Other advantages of Blosc are: |
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59 | |
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60 | * Meant for binary data: can take advantage of the type size |
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61 | meta-information for improved compression ratio (using the |
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62 | integrated shuffle pre-conditioner). |
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63 | |
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64 | * Small overhead on non-compressible data: only a maximum of 16 |
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65 | additional bytes over the source buffer length are needed to |
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66 | compress *every* input. |
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67 | |
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68 | * Maximum destination length: contrarily to many other |
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69 | compressors, both compression and decompression routines have |
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70 | support for maximum size lengths for the destination buffer. |
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71 | |
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72 | * Replacement for memcpy(): it supports a 0 compression level that |
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73 | does not compress at all and only adds 16 bytes of overhead. In |
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74 | this mode Blosc can copy memory usually faster than a plain |
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75 | memcpy(). |
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76 | |
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77 | When taken together, all these features set Blosc apart from other |
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78 | similar solutions. |
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79 | |
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80 | Compiling your application with Blosc |
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81 | ===================================== |
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82 | |
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83 | Blosc consists of the next files (in blosc/ directory):: |
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84 | |
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85 | blosc.h and blosc.c -- the main routines |
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86 | blosclz.h and blosclz.c -- the actual compressor |
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87 | shuffle.h and shuffle.c -- the shuffle code |
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88 | |
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89 | Just add these files to your project in order to use Blosc. For |
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90 | information on compression and decompression routines, see blosc.h. |
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91 | |
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92 | To compile using GCC (4.4 or higher recommended) on Unix: |
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93 | |
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94 | .. code-block:: console |
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95 | |
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96 | $ gcc -O3 -msse2 -o myprog myprog.c blosc/*.c -lpthread |
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97 | |
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98 | Using Windows and MINGW: |
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99 | |
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100 | .. code-block:: console |
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101 | |
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102 | $ gcc -O3 -msse2 -o myprog myprog.c blosc\*.c |
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103 | |
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104 | Using Windows and MSVC (2008 or higher recommended): |
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105 | |
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106 | .. code-block:: console |
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107 | |
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108 | $ cl /Ox /Femyprog.exe myprog.c blosc\*.c |
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109 | |
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110 | A simple usage example is the benchmark in the bench/bench.c file. |
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111 | Also, another example for using Blosc as a generic HDF5 filter is in |
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112 | the hdf5/ directory. |
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113 | |
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114 | I have not tried to compile this with compilers other than GCC, MINGW, |
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115 | Intel ICC or MSVC yet. Please report your experiences with your own |
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116 | platforms. |
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117 | |
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118 | Testing Blosc |
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119 | ============= |
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120 | |
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121 | Go to the test/ directory and issue: |
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122 | |
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123 | .. code-block:: console |
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124 | |
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125 | $ make test |
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126 | |
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127 | These tests are very basic, and only valid for platforms where GNU |
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128 | make/gcc tools are available. If you really want to test Blosc the |
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129 | hard way, look at: |
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130 | |
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131 | http://blosc.org/trac/wiki/SyntheticBenchmarks |
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132 | |
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133 | where instructions on how to intensively test (and benchmark) Blosc |
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134 | are given. If while running these tests you get some error, please |
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135 | report it back! |
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136 | |
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137 | Compiling the Blosc library with CMake |
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138 | ====================================== |
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139 | |
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140 | Blosc can also be built, tested and installed using CMake_. |
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141 | The following procedure describes the "out of source" build. |
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142 | |
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143 | Create the build directory and move into it: |
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144 | |
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145 | .. code-block:: console |
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146 | |
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147 | $ mkdir build |
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148 | $ cd build |
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149 | |
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150 | Configure Blosc in release mode (enable optimizations) specifying the |
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151 | installation directory: |
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152 | |
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153 | .. code-block:: console |
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154 | |
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155 | $ cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=INSTALL_DIR \ |
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156 | PATH_TO_BLOSC_SOURCE_DIR |
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157 | |
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158 | Please note that configuration can also be performed using UI tools |
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159 | provided by CMake_ (ccmake or cmake-gui): |
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160 | |
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161 | .. code-block:: console |
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162 | |
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163 | $ cmake-gui PATH_TO_BLOSC_SOURCE_DIR |
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164 | |
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165 | Build, test and install Blosc: |
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166 | |
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167 | .. code-block:: console |
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168 | |
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169 | $ make |
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170 | $ make test |
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171 | $ make install |
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172 | |
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173 | The static and dynamic version of the Blosc library, together with |
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174 | header files, will be installed into the specified INSTALL_DIR. |
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175 | |
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176 | .. _CMake: http://www.cmake.org |
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177 | |
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178 | Wrapper for Python |
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179 | ================== |
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180 | |
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181 | Blosc has an official wrapper for Python. See: |
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182 | |
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183 | https://github.com/FrancescAlted/python-blosc |
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184 | |
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185 | Filter for HDF5 |
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186 | =============== |
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187 | |
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188 | For those that want to use Blosc as a filter in the HDF5 library, |
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189 | there is a sample implementation in the hdf5/ directory. |
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190 | |
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191 | Mailing list |
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192 | ============ |
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193 | |
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194 | There is an official mailing list for Blosc at: |
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195 | |
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196 | [email protected] |
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197 | http://groups.google.es/group/blosc |
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198 | |
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199 | Acknowledgments |
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200 | =============== |
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201 | |
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202 | I'd like to thank the PyTables community that have collaborated in the |
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203 | exhaustive testing of Blosc. With an aggregate amount of more than 300 TB of |
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204 | different datasets compressed *and* decompressed successfully, I can say that |
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205 | Blosc is pretty safe now and ready for production purposes. |
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206 | |
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207 | Other important contributions: |
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208 | |
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209 | * Thibault North contributed a way to call Blosc from different threads in a |
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210 | safe way. |
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211 | |
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212 | * The cmake support was a contribution of Thibault North, Antonio Valentino |
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213 | and Mark Wiebe. |
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214 | |
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215 | * Valentin Haenel did a terrific work fixing typos and improving docs and the |
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216 | plotting script. |
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217 | |
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218 | |
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219 | ---- |
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220 | |
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221 | **Enjoy data!** |
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