1 | /** |
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2 | * @file sz_double_pwr.c |
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3 | * @author Sheng Di |
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4 | * @date Aug, 2016 |
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5 | * @brief SZ_Init, Compression and Decompression functions |
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6 | * This file contains the compression/decompression functions related to point-wise relative errors |
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7 | * (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory. |
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8 | * See COPYRIGHT in top-level directory. |
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9 | */ |
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10 | |
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11 | |
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12 | #include <stdio.h> |
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13 | #include <stdlib.h> |
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14 | #include <string.h> |
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15 | #include <unistd.h> |
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16 | #include <math.h> |
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17 | #include "sz.h" |
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18 | #include "CompressElement.h" |
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19 | #include "DynamicByteArray.h" |
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20 | #include "DynamicIntArray.h" |
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21 | #include "TightDataPointStorageD.h" |
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22 | #include "sz_double.h" |
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23 | #include "sz_double_pwr.h" |
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24 | #include "zlib.h" |
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25 | #include "rw.h" |
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26 | |
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27 | void compute_segment_precisions_double_1D(double *oriData, size_t dataLength, double* pwrErrBound, unsigned char* pwrErrBoundBytes, double globalPrecision) |
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28 | { |
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29 | size_t i = 0, j = 0, k = 0; |
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30 | double realPrecision = oriData[0]!=0?fabs(confparams_cpr->pw_relBoundRatio*oriData[0]):confparams_cpr->pw_relBoundRatio; |
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31 | double approxPrecision; |
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32 | unsigned char realPrecBytes[8]; |
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33 | double curPrecision; |
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34 | double curValue; |
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35 | double sum = 0; |
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36 | for(i=0;i<dataLength;i++) |
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37 | { |
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38 | curValue = oriData[i]; |
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39 | if(i%confparams_cpr->segment_size==0&&i>0) |
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40 | { |
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41 | //get two first bytes of the realPrecision |
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42 | if(confparams_cpr->pwr_type==SZ_PWR_AVG_TYPE) |
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43 | { |
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44 | realPrecision = sum/confparams_cpr->segment_size; |
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45 | sum = 0; |
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46 | } |
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47 | realPrecision *= confparams_cpr->pw_relBoundRatio; |
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48 | if(confparams_cpr->errorBoundMode==ABS_AND_PW_REL||confparams_cpr->errorBoundMode==REL_AND_PW_REL) |
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49 | realPrecision = realPrecision<globalPrecision?realPrecision:globalPrecision; |
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50 | else if(confparams_cpr->errorBoundMode==ABS_OR_PW_REL||confparams_cpr->errorBoundMode==REL_OR_PW_REL) |
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51 | realPrecision = realPrecision<globalPrecision?globalPrecision:realPrecision; |
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52 | |
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53 | doubleToBytes(realPrecBytes, realPrecision); |
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54 | memset(&realPrecBytes[2], 0, 6); |
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55 | approxPrecision = bytesToDouble(realPrecBytes); |
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56 | //put the realPrecision in double* pwrErBound |
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57 | pwrErrBound[j++] = approxPrecision; |
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58 | //put the two bytes in pwrErrBoundBytes |
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59 | pwrErrBoundBytes[k++] = realPrecBytes[0]; |
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60 | pwrErrBoundBytes[k++] = realPrecBytes[1]; |
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61 | |
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62 | realPrecision = fabs(curValue); |
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63 | } |
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64 | |
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65 | if(curValue!=0) |
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66 | { |
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67 | curPrecision = fabs(curValue); |
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68 | |
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69 | switch(confparams_cpr->pwr_type) |
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70 | { |
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71 | case SZ_PWR_MIN_TYPE: |
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72 | if(realPrecision>curPrecision) |
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73 | realPrecision = curPrecision; |
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74 | break; |
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75 | case SZ_PWR_AVG_TYPE: |
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76 | sum += curPrecision; |
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77 | break; |
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78 | case SZ_PWR_MAX_TYPE: |
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79 | if(realPrecision<curPrecision) |
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80 | realPrecision = curPrecision; |
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81 | break; |
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82 | } |
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83 | } |
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84 | } |
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85 | if(confparams_cpr->pwr_type==SZ_PWR_AVG_TYPE) |
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86 | { |
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87 | int size = dataLength%confparams_cpr->segment_size==0?confparams_cpr->segment_size:dataLength%confparams_cpr->segment_size; |
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88 | realPrecision = sum/size; |
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89 | } |
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90 | if(confparams_cpr->errorBoundMode==ABS_AND_PW_REL||confparams_cpr->errorBoundMode==REL_AND_PW_REL) |
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91 | realPrecision = realPrecision<globalPrecision?realPrecision:globalPrecision; |
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92 | else if(confparams_cpr->errorBoundMode==ABS_OR_PW_REL||confparams_cpr->errorBoundMode==REL_OR_PW_REL) |
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93 | realPrecision = realPrecision<globalPrecision?globalPrecision:realPrecision; |
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94 | doubleToBytes(realPrecBytes, realPrecision); |
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95 | memset(&realPrecBytes[2], 0, 6); |
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96 | approxPrecision = bytesToDouble(realPrecBytes); |
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97 | //put the realPrecision in double* pwrErBound |
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98 | pwrErrBound[j++] = approxPrecision; |
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99 | //put the two bytes in pwrErrBoundBytes |
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100 | pwrErrBoundBytes[k++] = realPrecBytes[0]; |
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101 | pwrErrBoundBytes[k++] = realPrecBytes[1]; |
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102 | } |
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103 | |
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104 | unsigned int optimize_intervals_double_1D_pwr(double *oriData, size_t dataLength, double* pwrErrBound) |
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105 | { |
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106 | size_t i = 0, j = 0; |
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107 | double realPrecision = pwrErrBound[j++]; |
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108 | unsigned long radiusIndex; |
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109 | double pred_value = 0, pred_err; |
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110 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
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111 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
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112 | int totalSampleSize = dataLength/confparams_cpr->sampleDistance; |
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113 | for(i=2;i<dataLength;i++) |
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114 | { |
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115 | if(i%confparams_cpr->segment_size==0) |
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116 | realPrecision = pwrErrBound[j++]; |
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117 | if(i%confparams_cpr->sampleDistance==0) |
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118 | { |
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119 | //pred_value = 2*oriData[i-1] - oriData[i-2]; |
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120 | pred_value = oriData[i-1]; |
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121 | pred_err = fabs(pred_value - oriData[i]); |
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122 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
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123 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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124 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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125 | intervals[radiusIndex]++; |
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126 | } |
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127 | } |
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128 | //compute the appropriate number |
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129 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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130 | size_t sum = 0; |
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131 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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132 | { |
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133 | sum += intervals[i]; |
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134 | if(sum>targetCount) |
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135 | break; |
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136 | } |
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137 | if(i>=confparams_cpr->maxRangeRadius) |
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138 | i = confparams_cpr->maxRangeRadius-1; |
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139 | unsigned int accIntervals = 2*(i+1); |
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140 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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141 | |
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142 | if(powerOf2<32) |
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143 | powerOf2 = 32; |
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144 | |
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145 | free(intervals); |
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146 | //printf("accIntervals=%d, powerOf2=%d\n", accIntervals, powerOf2); |
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147 | return powerOf2; |
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148 | } |
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149 | |
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150 | void compute_segment_precisions_double_2D(double *oriData, double* pwrErrBound, |
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151 | size_t r1, size_t r2, size_t R2, size_t edgeSize, unsigned char* pwrErrBoundBytes, double Min, double Max, double globalPrecision) |
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152 | { |
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153 | size_t i = 0, j = 0, k = 0, p = 0, index = 0, J = 0; //I=-1,J=-1 if they are needed |
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154 | double realPrecision; |
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155 | double approxPrecision; |
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156 | unsigned char realPrecBytes[8]; |
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157 | double curValue, curAbsValue; |
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158 | double* statAbsValues = (double*)malloc(R2*sizeof(double)); |
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159 | |
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160 | double max = fabs(Min)<fabs(Max)?fabs(Max):fabs(Min); //get the max abs value. |
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161 | double min = fabs(Min)<fabs(Max)?fabs(Min):fabs(Max); |
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162 | for(i=0;i<R2;i++) |
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163 | { |
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164 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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165 | statAbsValues[i] = max; |
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166 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
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167 | statAbsValues[i] = min; |
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168 | else |
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169 | statAbsValues[i] = 0; //for SZ_PWR_AVG_TYPE |
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170 | } |
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171 | for(i=0;i<r1;i++) |
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172 | { |
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173 | for(j=0;j<r2;j++) |
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174 | { |
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175 | index = i*r2+j; |
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176 | curValue = oriData[index]; |
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177 | if(((i%edgeSize==edgeSize-1 || i==r1-1) &&j%edgeSize==0&&j>0) || (i%edgeSize==0&&j==0&&i>0)) |
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178 | { |
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179 | if(confparams_cpr->pwr_type==SZ_PWR_AVG_TYPE) |
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180 | { |
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181 | int a = edgeSize, b = edgeSize; |
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182 | if(j==0) |
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183 | { |
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184 | if(r2%edgeSize==0) |
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185 | b = edgeSize; |
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186 | else |
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187 | b = r2%edgeSize; |
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188 | } |
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189 | if(i==r1-1) |
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190 | { |
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191 | if(r1%edgeSize==0) |
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192 | a = edgeSize; |
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193 | else |
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194 | a = r1%edgeSize; |
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195 | } |
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196 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J]/(a*b); |
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197 | } |
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198 | else |
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199 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J]; |
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200 | |
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201 | if(confparams_cpr->errorBoundMode==ABS_AND_PW_REL||confparams_cpr->errorBoundMode==REL_AND_PW_REL) |
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202 | realPrecision = realPrecision<globalPrecision?realPrecision:globalPrecision; |
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203 | else if(confparams_cpr->errorBoundMode==ABS_OR_PW_REL||confparams_cpr->errorBoundMode==REL_OR_PW_REL) |
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204 | realPrecision = realPrecision<globalPrecision?globalPrecision:realPrecision; |
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205 | |
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206 | doubleToBytes(realPrecBytes, realPrecision); |
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207 | memset(&realPrecBytes[2], 0, 6); |
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208 | approxPrecision = bytesToDouble(realPrecBytes); |
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209 | //put the realPrecision in double* pwrErBound |
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210 | pwrErrBound[p++] = approxPrecision; |
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211 | //put the two bytes in pwrErrBoundBytes |
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212 | pwrErrBoundBytes[k++] = realPrecBytes[0]; |
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213 | pwrErrBoundBytes[k++] = realPrecBytes[1]; |
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214 | |
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215 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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216 | statAbsValues[J] = max; |
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217 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
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218 | statAbsValues[J] = min; |
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219 | else |
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220 | statAbsValues[J] = 0; //for SZ_PWR_AVG_TYPE |
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221 | } |
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222 | if(j==0) |
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223 | J = 0; |
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224 | else if(j%edgeSize==0) |
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225 | J++; |
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226 | if(curValue!=0) |
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227 | { |
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228 | curAbsValue = fabs(curValue); |
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229 | |
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230 | switch(confparams_cpr->pwr_type) |
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231 | { |
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232 | case SZ_PWR_MIN_TYPE: |
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233 | if(statAbsValues[J]>curAbsValue) |
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234 | statAbsValues[J] = curAbsValue; |
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235 | break; |
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236 | case SZ_PWR_AVG_TYPE: |
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237 | statAbsValues[J] += curAbsValue; |
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238 | break; |
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239 | case SZ_PWR_MAX_TYPE: |
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240 | if(statAbsValues[J]<curAbsValue) |
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241 | statAbsValues[J] = curAbsValue; |
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242 | break; |
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243 | } |
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244 | } |
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245 | } |
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246 | } |
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247 | |
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248 | if(confparams_cpr->pwr_type==SZ_PWR_AVG_TYPE) |
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249 | { |
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250 | int a = edgeSize, b = edgeSize; |
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251 | if(r2%edgeSize==0) |
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252 | b = edgeSize; |
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253 | else |
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254 | b = r2%edgeSize; |
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255 | if(r1%edgeSize==0) |
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256 | a = edgeSize; |
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257 | else |
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258 | a = r1%edgeSize; |
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259 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J]/(a*b); |
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260 | } |
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261 | else |
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262 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J]; |
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263 | |
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264 | if(confparams_cpr->errorBoundMode==ABS_AND_PW_REL||confparams_cpr->errorBoundMode==REL_AND_PW_REL) |
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265 | realPrecision = realPrecision<globalPrecision?realPrecision:globalPrecision; |
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266 | else if(confparams_cpr->errorBoundMode==ABS_OR_PW_REL||confparams_cpr->errorBoundMode==REL_OR_PW_REL) |
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267 | realPrecision = realPrecision<globalPrecision?globalPrecision:realPrecision; |
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268 | |
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269 | doubleToBytes(realPrecBytes, realPrecision); |
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270 | realPrecBytes[2] = realPrecBytes[3] = 0; |
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271 | approxPrecision = bytesToDouble(realPrecBytes); |
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272 | //put the realPrecision in double* pwrErBound |
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273 | pwrErrBound[p++] = approxPrecision; |
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274 | //put the two bytes in pwrErrBoundBytes |
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275 | pwrErrBoundBytes[k++] = realPrecBytes[0]; |
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276 | pwrErrBoundBytes[k++] = realPrecBytes[1]; |
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277 | |
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278 | free(statAbsValues); |
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279 | } |
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280 | |
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281 | unsigned int optimize_intervals_double_2D_pwr(double *oriData, size_t r1, size_t r2, size_t R2, size_t edgeSize, double* pwrErrBound) |
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282 | { |
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283 | size_t i = 0,j = 0, index, I=0, J=0; |
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284 | double realPrecision = pwrErrBound[0]; |
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285 | unsigned long radiusIndex; |
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286 | double pred_value = 0, pred_err; |
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287 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
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288 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
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289 | size_t totalSampleSize = (r1-1)*(r2-1)/confparams_cpr->sampleDistance; |
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290 | size_t ir2; |
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291 | for(i=1;i<r1;i++) |
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292 | { |
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293 | ir2 = i*r2; |
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294 | if(i%edgeSize==0) |
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295 | { |
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296 | I++; |
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297 | J = 0; |
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298 | } |
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299 | for(j=1;j<r2;j++) |
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300 | { |
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301 | index = ir2+j; |
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302 | if(j%edgeSize==0) |
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303 | J++; |
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304 | |
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305 | if((i+j)%confparams_cpr->sampleDistance==0) |
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306 | { |
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307 | realPrecision = pwrErrBound[I*R2+J]; |
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308 | pred_value = oriData[index-1] + oriData[index-r2] - oriData[index-r2-1]; |
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309 | pred_err = fabs(pred_value - oriData[index]); |
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310 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
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311 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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312 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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313 | intervals[radiusIndex]++; |
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314 | } |
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315 | } |
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316 | } |
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317 | //compute the appropriate number |
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318 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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319 | size_t sum = 0; |
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320 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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321 | { |
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322 | sum += intervals[i]; |
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323 | if(sum>targetCount) |
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324 | break; |
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325 | } |
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326 | if(i>=confparams_cpr->maxRangeRadius) |
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327 | i = confparams_cpr->maxRangeRadius-1; |
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328 | unsigned int accIntervals = 2*(i+1); |
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329 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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330 | |
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331 | if(powerOf2<32) |
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332 | powerOf2 = 32; |
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333 | |
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334 | free(intervals); |
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335 | //printf("confparams_cpr->maxRangeRadius = %d, accIntervals=%d, powerOf2=%d\n", confparams_cpr->maxRangeRadius, accIntervals, powerOf2); |
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336 | return powerOf2; |
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337 | } |
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338 | |
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339 | void compute_segment_precisions_double_3D(double *oriData, double* pwrErrBound, |
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340 | size_t r1, size_t r2, size_t r3, size_t R2, size_t R3, size_t edgeSize, unsigned char* pwrErrBoundBytes, double Min, double Max, double globalPrecision) |
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341 | { |
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342 | size_t i = 0, j = 0, k = 0, p = 0, q = 0, index = 0, J = 0, K = 0; //I=-1,J=-1 if they are needed |
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343 | size_t r23 = r2*r3, ir, jr; |
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344 | double realPrecision; |
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345 | double approxPrecision; |
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346 | unsigned char realPrecBytes[8]; |
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347 | double curValue, curAbsValue; |
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348 | |
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349 | double** statAbsValues = create2DArray_double(R2, R3); |
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350 | double max = fabs(Min)<fabs(Max)?fabs(Max):fabs(Min); //get the max abs value. |
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351 | double min = fabs(Min)<fabs(Max)?fabs(Min):fabs(Max); |
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352 | for(i=0;i<R2;i++) |
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353 | for(j=0;j<R3;j++) |
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354 | { |
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355 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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356 | statAbsValues[i][j] = max; |
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357 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
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358 | statAbsValues[i][j] = min; |
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359 | else |
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360 | statAbsValues[i][j] = 0; |
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361 | } |
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362 | for(i=0;i<r1;i++) |
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363 | { |
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364 | ir = i*r23; |
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365 | if(i%edgeSize==0&&i>0) |
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366 | { |
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367 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J][K]; |
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368 | doubleToBytes(realPrecBytes, realPrecision); |
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369 | memset(&realPrecBytes[2], 0, 6); |
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370 | approxPrecision = bytesToDouble(realPrecBytes); |
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371 | //put the realPrecision in double* pwrErBound |
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372 | pwrErrBound[p++] = approxPrecision; |
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373 | //put the two bytes in pwrErrBoundBytes |
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374 | //printf("q=%d, i=%d, j=%d, k=%d\n",q,i,j,k); |
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375 | pwrErrBoundBytes[q++] = realPrecBytes[0]; |
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376 | pwrErrBoundBytes[q++] = realPrecBytes[1]; |
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377 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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378 | statAbsValues[J][K] = max; |
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379 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
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380 | statAbsValues[J][K] = min; |
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381 | } |
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382 | for(j=0;j<r2;j++) |
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383 | { |
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384 | jr = j*r3; |
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385 | if((i%edgeSize==edgeSize-1 || i == r1-1)&&j%edgeSize==0&&j>0) |
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386 | { |
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387 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J][K]; |
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388 | doubleToBytes(realPrecBytes, realPrecision); |
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389 | memset(&realPrecBytes[2], 0, 6); |
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390 | approxPrecision = bytesToDouble(realPrecBytes); |
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391 | //put the realPrecision in double* pwrErBound |
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392 | pwrErrBound[p++] = approxPrecision; |
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393 | //put the two bytes in pwrErrBoundBytes |
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394 | //printf("q=%d, i=%d, j=%d, k=%d\n",q,i,j,k); |
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395 | pwrErrBoundBytes[q++] = realPrecBytes[0]; |
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396 | pwrErrBoundBytes[q++] = realPrecBytes[1]; |
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397 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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398 | statAbsValues[J][K] = max; |
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399 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
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400 | statAbsValues[J][K] = min; |
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401 | } |
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402 | |
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403 | if(j==0) |
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404 | J = 0; |
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405 | else if(j%edgeSize==0) |
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406 | J++; |
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407 | |
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408 | for(k=0;k<r3;k++) |
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409 | { |
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410 | index = ir+jr+k; |
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411 | curValue = oriData[index]; |
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412 | if((i%edgeSize==edgeSize-1 || i == r1-1)&&(j%edgeSize==edgeSize-1||j==r2-1)&&k%edgeSize==0&&k>0) |
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413 | { |
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414 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J][K]; |
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415 | doubleToBytes(realPrecBytes, realPrecision); |
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416 | memset(&realPrecBytes[2], 0, 6); |
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417 | approxPrecision = bytesToDouble(realPrecBytes); |
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418 | //put the realPrecision in double* pwrErBound |
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419 | pwrErrBound[p++] = approxPrecision; |
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420 | //put the two bytes in pwrErrBoundBytes |
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421 | //printf("q=%d, i=%d, j=%d, k=%d\n",q,i,j,k); |
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422 | pwrErrBoundBytes[q++] = realPrecBytes[0]; |
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423 | pwrErrBoundBytes[q++] = realPrecBytes[1]; |
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424 | |
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425 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
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426 | statAbsValues[J][K] = max; |
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427 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
---|
428 | statAbsValues[J][K] = min; |
---|
429 | } |
---|
430 | |
---|
431 | if(k==0) |
---|
432 | K = 0; |
---|
433 | else if(k%edgeSize==0) |
---|
434 | K++; |
---|
435 | |
---|
436 | if(curValue!=0) |
---|
437 | { |
---|
438 | curAbsValue = fabs(curValue); |
---|
439 | if(confparams_cpr->pwr_type == SZ_PWR_MIN_TYPE) |
---|
440 | { |
---|
441 | if(statAbsValues[J][K]>curAbsValue) |
---|
442 | { |
---|
443 | statAbsValues[J][K] = curAbsValue; |
---|
444 | } |
---|
445 | } |
---|
446 | else if(confparams_cpr->pwr_type == SZ_PWR_MAX_TYPE) |
---|
447 | { |
---|
448 | if(statAbsValues[J][K]<curAbsValue) |
---|
449 | { |
---|
450 | statAbsValues[J][K] = curAbsValue; |
---|
451 | } |
---|
452 | } |
---|
453 | } |
---|
454 | } |
---|
455 | } |
---|
456 | } |
---|
457 | |
---|
458 | realPrecision = confparams_cpr->pw_relBoundRatio*statAbsValues[J][K]; |
---|
459 | doubleToBytes(realPrecBytes, realPrecision); |
---|
460 | memset(&realPrecBytes[2], 0, 6); |
---|
461 | approxPrecision = bytesToDouble(realPrecBytes); |
---|
462 | //put the realPrecision in double* pwrErBound |
---|
463 | pwrErrBound[p++] = approxPrecision; |
---|
464 | //put the two bytes in pwrErrBoundBytes |
---|
465 | pwrErrBoundBytes[q++] = realPrecBytes[0]; |
---|
466 | pwrErrBoundBytes[q++] = realPrecBytes[1]; |
---|
467 | |
---|
468 | free2DArray_double(statAbsValues, R2); |
---|
469 | } |
---|
470 | |
---|
471 | unsigned int optimize_intervals_double_3D_pwr(double *oriData, size_t r1, size_t r2, size_t r3, size_t R2, size_t R3, size_t edgeSize, double* pwrErrBound) |
---|
472 | { |
---|
473 | size_t i,j,k, ir,jr,index, I = 0,J=0,K=0; |
---|
474 | double realPrecision = pwrErrBound[0]; |
---|
475 | unsigned long radiusIndex; |
---|
476 | size_t r23=r2*r3; |
---|
477 | size_t R23 = R2*R3; |
---|
478 | double pred_value = 0, pred_err; |
---|
479 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
480 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
481 | size_t totalSampleSize = (r1-1)*(r2-1)*(r3-1)/confparams_cpr->sampleDistance; |
---|
482 | for(i=1;i<r1;i++) |
---|
483 | { |
---|
484 | ir = i*r23; |
---|
485 | if(i%edgeSize==0) |
---|
486 | { |
---|
487 | I++; |
---|
488 | J = 0; |
---|
489 | } |
---|
490 | for(j=1;j<r2;j++) |
---|
491 | { |
---|
492 | jr = j*r3; |
---|
493 | if(j%edgeSize==0) |
---|
494 | { |
---|
495 | J++; |
---|
496 | K = 0; |
---|
497 | } |
---|
498 | for(k=1;k<r3;k++) |
---|
499 | { |
---|
500 | index = ir+jr+k; |
---|
501 | if(k%edgeSize==0) |
---|
502 | K++; |
---|
503 | if((i+j+k)%confparams_cpr->sampleDistance==0) |
---|
504 | { |
---|
505 | realPrecision = pwrErrBound[I*R23+J*R2+K]; |
---|
506 | pred_value = oriData[index-1] + oriData[index-r3] + oriData[index-r23] |
---|
507 | - oriData[index-1-r23] - oriData[index-r3-1] - oriData[index-r3-r23] + oriData[index-r3-r23-1]; |
---|
508 | pred_err = fabs(pred_value - oriData[index]); |
---|
509 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
510 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
511 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
512 | intervals[radiusIndex]++; |
---|
513 | } |
---|
514 | } |
---|
515 | } |
---|
516 | } |
---|
517 | //compute the appropriate number |
---|
518 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
519 | size_t sum = 0; |
---|
520 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
521 | { |
---|
522 | sum += intervals[i]; |
---|
523 | if(sum>targetCount) |
---|
524 | break; |
---|
525 | } |
---|
526 | if(i>=confparams_cpr->maxRangeRadius) |
---|
527 | i = confparams_cpr->maxRangeRadius-1; |
---|
528 | unsigned int accIntervals = 2*(i+1); |
---|
529 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
530 | |
---|
531 | if(powerOf2<32) |
---|
532 | powerOf2 = 32; |
---|
533 | |
---|
534 | free(intervals); |
---|
535 | //printf("accIntervals=%d, powerOf2=%d\n", accIntervals, powerOf2); |
---|
536 | return powerOf2; |
---|
537 | } |
---|
538 | |
---|
539 | void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision, |
---|
540 | size_t dataLength, size_t *outSize, double min, double max) |
---|
541 | { |
---|
542 | size_t pwrLength = dataLength%confparams_cpr->segment_size==0?dataLength/confparams_cpr->segment_size:dataLength/confparams_cpr->segment_size+1; |
---|
543 | double* pwrErrBound = (double*)malloc(sizeof(double)*pwrLength); |
---|
544 | size_t pwrErrBoundBytes_size = sizeof(unsigned char)*pwrLength*2; |
---|
545 | unsigned char* pwrErrBoundBytes = (unsigned char*)malloc(pwrErrBoundBytes_size); |
---|
546 | |
---|
547 | compute_segment_precisions_double_1D(oriData, dataLength, pwrErrBound, pwrErrBoundBytes, globalPrecision); |
---|
548 | |
---|
549 | unsigned int quantization_intervals; |
---|
550 | if(exe_params->optQuantMode==1) |
---|
551 | { |
---|
552 | quantization_intervals = optimize_intervals_double_1D_pwr(oriData, dataLength, pwrErrBound); |
---|
553 | updateQuantizationInfo(quantization_intervals); |
---|
554 | } |
---|
555 | else |
---|
556 | quantization_intervals = exe_params->intvCapacity; |
---|
557 | size_t i = 0, j = 0; |
---|
558 | int reqLength; |
---|
559 | double realPrecision = pwrErrBound[j++]; |
---|
560 | double medianValue = 0; |
---|
561 | double radius = fabs(max)<fabs(min)?fabs(min):fabs(max); |
---|
562 | short radExpo = getExponent_double(radius); |
---|
563 | |
---|
564 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
565 | |
---|
566 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
567 | //type[dataLength]=0; |
---|
568 | |
---|
569 | double* spaceFillingValue = oriData; // |
---|
570 | |
---|
571 | DynamicByteArray *resiBitLengthArray; |
---|
572 | new_DBA(&resiBitLengthArray, DynArrayInitLen); |
---|
573 | |
---|
574 | DynamicIntArray *exactLeadNumArray; |
---|
575 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
576 | |
---|
577 | DynamicByteArray *exactMidByteArray; |
---|
578 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
579 | |
---|
580 | DynamicIntArray *resiBitArray; |
---|
581 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
582 | |
---|
583 | type[0] = 0; |
---|
584 | |
---|
585 | unsigned char preDataBytes[8] = {0}; |
---|
586 | intToBytes_bigEndian(preDataBytes, 0); |
---|
587 | |
---|
588 | int reqBytesLength = reqLength/8; |
---|
589 | int resiBitsLength = reqLength%8; |
---|
590 | double last3CmprsData[3] = {0}; |
---|
591 | |
---|
592 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
593 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
594 | |
---|
595 | //add the first data |
---|
596 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
597 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
598 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
599 | memcpy(preDataBytes,vce->curBytes,8); |
---|
600 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
601 | listAdd_double(last3CmprsData, vce->data); |
---|
602 | //printf("%.30G\n",last3CmprsData[0]); |
---|
603 | |
---|
604 | //add the second data |
---|
605 | type[1] = 0; |
---|
606 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
607 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
608 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
609 | memcpy(preDataBytes,vce->curBytes,8); |
---|
610 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
611 | listAdd_double(last3CmprsData, vce->data); |
---|
612 | //printf("%.30G\n",last3CmprsData[0]); |
---|
613 | |
---|
614 | int state; |
---|
615 | double checkRadius; |
---|
616 | double curData; |
---|
617 | double pred; |
---|
618 | double predAbsErr; |
---|
619 | checkRadius = (exe_params->intvCapacity-1)*realPrecision; |
---|
620 | double interval = 2*realPrecision; |
---|
621 | int updateReqLength = 0; //a marker: 1 means already updated |
---|
622 | |
---|
623 | for(i=2;i<dataLength;i++) |
---|
624 | { |
---|
625 | curData = spaceFillingValue[i]; |
---|
626 | if(i%confparams_cpr->segment_size==0) |
---|
627 | { |
---|
628 | realPrecision = pwrErrBound[j++]; |
---|
629 | checkRadius = (exe_params->intvCapacity-1)*realPrecision; |
---|
630 | interval = 2*realPrecision; |
---|
631 | updateReqLength = 0; |
---|
632 | } |
---|
633 | //pred = 2*last3CmprsData[0] - last3CmprsData[1]; |
---|
634 | pred = last3CmprsData[0]; |
---|
635 | predAbsErr = fabs(curData - pred); |
---|
636 | if(predAbsErr<checkRadius) |
---|
637 | { |
---|
638 | state = (predAbsErr/realPrecision+1)/2; |
---|
639 | if(curData>=pred) |
---|
640 | { |
---|
641 | type[i] = exe_params->intvRadius+state; |
---|
642 | pred = pred + state*interval; |
---|
643 | } |
---|
644 | else //curData<pred |
---|
645 | { |
---|
646 | type[i] = exe_params->intvRadius-state; |
---|
647 | pred = pred - state*interval; |
---|
648 | } |
---|
649 | listAdd_double(last3CmprsData, pred); |
---|
650 | continue; |
---|
651 | } |
---|
652 | |
---|
653 | //unpredictable data processing |
---|
654 | if(updateReqLength==0) |
---|
655 | { |
---|
656 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
657 | reqBytesLength = reqLength/8; |
---|
658 | resiBitsLength = reqLength%8; |
---|
659 | updateReqLength = 1; |
---|
660 | } |
---|
661 | |
---|
662 | type[i] = 0; |
---|
663 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
664 | |
---|
665 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
666 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
667 | memcpy(preDataBytes,vce->curBytes,8); |
---|
668 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
669 | |
---|
670 | listAdd_double(last3CmprsData, vce->data); |
---|
671 | }//end of for |
---|
672 | |
---|
673 | // char* expSegmentsInBytes; |
---|
674 | // int expSegmentsInBytes_size = convertESCToBytes(esc, &expSegmentsInBytes); |
---|
675 | int exactDataNum = exactLeadNumArray->size; |
---|
676 | |
---|
677 | TightDataPointStorageD* tdps; |
---|
678 | |
---|
679 | new_TightDataPointStorageD2(&tdps, dataLength, exactDataNum, |
---|
680 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
681 | exactLeadNumArray->array, |
---|
682 | resiBitArray->array, resiBitArray->size, |
---|
683 | resiBitLengthArray->array, resiBitLengthArray->size, |
---|
684 | realPrecision, medianValue, (char)reqLength, quantization_intervals, pwrErrBoundBytes, pwrErrBoundBytes_size, radExpo); |
---|
685 | |
---|
686 | //sdi:Debug |
---|
687 | /* int sum =0; |
---|
688 | for(i=0;i<dataLength;i++) |
---|
689 | if(type[i]==0) sum++; |
---|
690 | printf("opt_quantizations=%d, exactDataNum=%d, sum=%d\n",quantization_intervals, exactDataNum, sum); |
---|
691 | */ |
---|
692 | // writeUShortData(type, dataLength, "compressStateBytes.sb"); |
---|
693 | // unsigned short type_[dataLength]; |
---|
694 | // SZ_Reset(); |
---|
695 | // decode_withTree(tdps->typeArray, tdps->typeArray_size, type_); |
---|
696 | // printf("tdps->typeArray_size=%d\n", tdps->typeArray_size); |
---|
697 | |
---|
698 | //free memory |
---|
699 | free_DBA(resiBitLengthArray); |
---|
700 | free_DIA(exactLeadNumArray); |
---|
701 | free_DIA(resiBitArray); |
---|
702 | free(type); |
---|
703 | |
---|
704 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
705 | |
---|
706 | int doubleSize=sizeof(double); |
---|
707 | if(*outSize>dataLength*doubleSize) |
---|
708 | { |
---|
709 | size_t k = 0, i; |
---|
710 | tdps->isLossless = 1; |
---|
711 | size_t totalByteLength = 3 + exe_params->SZ_SIZE_TYPE + 1 + doubleSize*dataLength; |
---|
712 | *newByteData = (unsigned char*)malloc(totalByteLength); |
---|
713 | |
---|
714 | unsigned char dsLengthBytes[exe_params->SZ_SIZE_TYPE]; |
---|
715 | intToBytes_bigEndian(dsLengthBytes, dataLength);//4 |
---|
716 | for (i = 0; i < 3; i++)//3 |
---|
717 | (*newByteData)[k++] = versionNumber[i]; |
---|
718 | |
---|
719 | if(exe_params->SZ_SIZE_TYPE==4) |
---|
720 | { |
---|
721 | (*newByteData)[k++] = 16; //=00010000 |
---|
722 | } |
---|
723 | else |
---|
724 | { |
---|
725 | (*newByteData)[k++] = 80; |
---|
726 | } |
---|
727 | for (i = 0; i < exe_params->SZ_SIZE_TYPE; i++)//4 or 8 |
---|
728 | (*newByteData)[k++] = dsLengthBytes[i]; |
---|
729 | |
---|
730 | |
---|
731 | if(sysEndianType==BIG_ENDIAN_SYSTEM) |
---|
732 | memcpy((*newByteData)+4+exe_params->SZ_SIZE_TYPE, oriData, dataLength*doubleSize); |
---|
733 | else |
---|
734 | { |
---|
735 | unsigned char* p = (*newByteData)+4+exe_params->SZ_SIZE_TYPE; |
---|
736 | for(i=0;i<dataLength;i++,p+=doubleSize) |
---|
737 | doubleToBytes(p, oriData[i]); |
---|
738 | } |
---|
739 | *outSize = totalByteLength; |
---|
740 | } |
---|
741 | |
---|
742 | free(pwrErrBound); |
---|
743 | |
---|
744 | free(vce); |
---|
745 | free(lce); |
---|
746 | free_TightDataPointStorageD(tdps); |
---|
747 | free(exactMidByteArray); |
---|
748 | } |
---|
749 | |
---|
750 | |
---|
751 | /** |
---|
752 | * |
---|
753 | * Note: @r1 is high dimension |
---|
754 | * @r2 is low dimension |
---|
755 | * */ |
---|
756 | void SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision, size_t r1, size_t r2, |
---|
757 | size_t *outSize, double min, double max) |
---|
758 | { |
---|
759 | size_t dataLength=r1*r2; |
---|
760 | int blockEdgeSize = computeBlockEdgeSize_2D(confparams_cpr->segment_size); |
---|
761 | size_t R1 = 1+(r1-1)/blockEdgeSize; |
---|
762 | size_t R2 = 1+(r2-1)/blockEdgeSize; |
---|
763 | double* pwrErrBound = (double*)malloc(sizeof(double)*R1*R2); |
---|
764 | size_t pwrErrBoundBytes_size = sizeof(unsigned char)*R1*R2*2; |
---|
765 | unsigned char* pwrErrBoundBytes = (unsigned char*)malloc(pwrErrBoundBytes_size); |
---|
766 | |
---|
767 | compute_segment_precisions_double_2D(oriData, pwrErrBound, r1, r2, R2, blockEdgeSize, pwrErrBoundBytes, min, max, globalPrecision); |
---|
768 | unsigned int quantization_intervals; |
---|
769 | if(exe_params->optQuantMode==1) |
---|
770 | { |
---|
771 | quantization_intervals = optimize_intervals_double_2D_pwr(oriData, r1, r2, R2, blockEdgeSize, pwrErrBound); |
---|
772 | updateQuantizationInfo(quantization_intervals); |
---|
773 | } |
---|
774 | else |
---|
775 | quantization_intervals = exe_params->intvCapacity; |
---|
776 | //printf("quantization_intervals=%d\n",quantization_intervals); |
---|
777 | |
---|
778 | size_t i=0,j=0,I=0,J=0; |
---|
779 | int reqLength; |
---|
780 | double realPrecision = pwrErrBound[I*R2+J]; |
---|
781 | double pred1D, pred2D; |
---|
782 | double diff = 0.0; |
---|
783 | double itvNum = 0; |
---|
784 | double *P0, *P1; |
---|
785 | |
---|
786 | P0 = (double*)malloc(r2*sizeof(double)); |
---|
787 | memset(P0, 0, r2*sizeof(double)); |
---|
788 | P1 = (double*)malloc(r2*sizeof(double)); |
---|
789 | memset(P1, 0, r2*sizeof(double)); |
---|
790 | |
---|
791 | double medianValue = 0; |
---|
792 | double radius = fabs(max)<fabs(min)?fabs(min):fabs(max); |
---|
793 | short radExpo = getExponent_double(radius); |
---|
794 | int updateReqLength = 1; |
---|
795 | |
---|
796 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
797 | |
---|
798 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
799 | //type[dataLength]=0; |
---|
800 | |
---|
801 | double* spaceFillingValue = oriData; // |
---|
802 | |
---|
803 | DynamicByteArray *resiBitLengthArray; |
---|
804 | new_DBA(&resiBitLengthArray, DynArrayInitLen); |
---|
805 | |
---|
806 | DynamicIntArray *exactLeadNumArray; |
---|
807 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
808 | |
---|
809 | DynamicByteArray *exactMidByteArray; |
---|
810 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
811 | |
---|
812 | DynamicIntArray *resiBitArray; |
---|
813 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
814 | |
---|
815 | type[0] = 0; |
---|
816 | |
---|
817 | unsigned char preDataBytes[8]; |
---|
818 | longToBytes_bigEndian(preDataBytes, 0); |
---|
819 | |
---|
820 | int reqBytesLength = reqLength/8; |
---|
821 | int resiBitsLength = reqLength%8; |
---|
822 | |
---|
823 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
824 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
825 | |
---|
826 | /* Process Row-0 data 0*/ |
---|
827 | type[0] = 0; |
---|
828 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
829 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
830 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
831 | memcpy(preDataBytes,vce->curBytes,8); |
---|
832 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
833 | P1[0] = vce->data; |
---|
834 | |
---|
835 | /* Process Row-0 data 1*/ |
---|
836 | pred1D = P1[0]; |
---|
837 | diff = spaceFillingValue[1] - pred1D; |
---|
838 | |
---|
839 | itvNum = fabs(diff)/realPrecision + 1; |
---|
840 | |
---|
841 | if (itvNum < exe_params->intvCapacity) |
---|
842 | { |
---|
843 | if (diff < 0) itvNum = -itvNum; |
---|
844 | type[1] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
845 | P1[1] = pred1D + 2 * (type[1] - exe_params->intvRadius) * realPrecision; |
---|
846 | } |
---|
847 | else |
---|
848 | { |
---|
849 | type[1] = 0; |
---|
850 | |
---|
851 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
852 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
853 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
854 | memcpy(preDataBytes,vce->curBytes,8); |
---|
855 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
856 | P1[1] = vce->data; |
---|
857 | } |
---|
858 | |
---|
859 | /* Process Row-0 data 2 --> data r2-1 */ |
---|
860 | for (j = 2; j < r2; j++) |
---|
861 | { |
---|
862 | if(j%blockEdgeSize==0) |
---|
863 | { |
---|
864 | J++; |
---|
865 | realPrecision = pwrErrBound[I*R2+J]; |
---|
866 | updateReqLength = 0; |
---|
867 | } |
---|
868 | |
---|
869 | pred1D = 2*P1[j-1] - P1[j-2]; |
---|
870 | diff = spaceFillingValue[j] - pred1D; |
---|
871 | |
---|
872 | itvNum = fabs(diff)/realPrecision + 1; |
---|
873 | |
---|
874 | if (itvNum < exe_params->intvCapacity) |
---|
875 | { |
---|
876 | if (diff < 0) itvNum = -itvNum; |
---|
877 | type[j] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
878 | P1[j] = pred1D + 2 * (type[j] - exe_params->intvRadius) * realPrecision; |
---|
879 | } |
---|
880 | else |
---|
881 | { |
---|
882 | if(updateReqLength==0) |
---|
883 | { |
---|
884 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
885 | reqBytesLength = reqLength/8; |
---|
886 | resiBitsLength = reqLength%8; |
---|
887 | updateReqLength = 1; |
---|
888 | } |
---|
889 | |
---|
890 | type[j] = 0; |
---|
891 | |
---|
892 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
893 | compressSingleDoubleValue(vce, spaceFillingValue[j], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
894 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
895 | memcpy(preDataBytes,vce->curBytes,8); |
---|
896 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
897 | P1[j] = vce->data; |
---|
898 | } |
---|
899 | } |
---|
900 | |
---|
901 | /* Process Row-1 --> Row-r1-1 */ |
---|
902 | size_t index; |
---|
903 | for (i = 1; i < r1; i++) |
---|
904 | { |
---|
905 | /* Process row-i data 0 */ |
---|
906 | index = i*r2; |
---|
907 | J = 0; |
---|
908 | if(i%blockEdgeSize==0) |
---|
909 | I++; |
---|
910 | realPrecision = pwrErrBound[I*R2+J]; //J==0 |
---|
911 | updateReqLength = 0; |
---|
912 | |
---|
913 | pred1D = P1[0]; |
---|
914 | diff = spaceFillingValue[index] - pred1D; |
---|
915 | |
---|
916 | itvNum = fabs(diff)/realPrecision + 1; |
---|
917 | |
---|
918 | if (itvNum < exe_params->intvCapacity) |
---|
919 | { |
---|
920 | if (diff < 0) itvNum = -itvNum; |
---|
921 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
922 | P0[0] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
923 | } |
---|
924 | else |
---|
925 | { |
---|
926 | if(updateReqLength==0) |
---|
927 | { |
---|
928 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
929 | reqBytesLength = reqLength/8; |
---|
930 | resiBitsLength = reqLength%8; |
---|
931 | updateReqLength = 1; |
---|
932 | } |
---|
933 | |
---|
934 | type[index] = 0; |
---|
935 | |
---|
936 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
937 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
938 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
939 | memcpy(preDataBytes,vce->curBytes,8); |
---|
940 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
941 | P0[0] = vce->data; |
---|
942 | } |
---|
943 | |
---|
944 | /* Process row-i data 1 --> r2-1*/ |
---|
945 | for (j = 1; j < r2; j++) |
---|
946 | { |
---|
947 | index = i*r2+j; |
---|
948 | if(j%blockEdgeSize==0) |
---|
949 | { |
---|
950 | J++; |
---|
951 | realPrecision = pwrErrBound[I*R2+J]; |
---|
952 | updateReqLength = 0; |
---|
953 | } |
---|
954 | pred2D = P0[j-1] + P1[j] - P1[j-1]; |
---|
955 | |
---|
956 | diff = spaceFillingValue[index] - pred2D; |
---|
957 | |
---|
958 | itvNum = fabs(diff)/realPrecision + 1; |
---|
959 | |
---|
960 | if (itvNum < exe_params->intvCapacity) |
---|
961 | { |
---|
962 | if (diff < 0) itvNum = -itvNum; |
---|
963 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
964 | P0[j] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
965 | } |
---|
966 | else |
---|
967 | { |
---|
968 | if(updateReqLength==0) |
---|
969 | { |
---|
970 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
971 | reqBytesLength = reqLength/8; |
---|
972 | resiBitsLength = reqLength%8; |
---|
973 | updateReqLength = 1; |
---|
974 | } |
---|
975 | |
---|
976 | type[index] = 0; |
---|
977 | |
---|
978 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
979 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
980 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
981 | memcpy(preDataBytes,vce->curBytes,8); |
---|
982 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
983 | P0[j] = vce->data; |
---|
984 | } |
---|
985 | } |
---|
986 | |
---|
987 | double *Pt; |
---|
988 | Pt = P1; |
---|
989 | P1 = P0; |
---|
990 | P0 = Pt; |
---|
991 | } |
---|
992 | |
---|
993 | if(r2!=1) |
---|
994 | free(P0); |
---|
995 | free(P1); |
---|
996 | int exactDataNum = exactLeadNumArray->size; |
---|
997 | |
---|
998 | TightDataPointStorageD* tdps; |
---|
999 | |
---|
1000 | new_TightDataPointStorageD2(&tdps, dataLength, exactDataNum, |
---|
1001 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
1002 | exactLeadNumArray->array, |
---|
1003 | resiBitArray->array, resiBitArray->size, |
---|
1004 | resiBitLengthArray->array, resiBitLengthArray->size, |
---|
1005 | realPrecision, medianValue, (char)reqLength, quantization_intervals, pwrErrBoundBytes, pwrErrBoundBytes_size, radExpo); |
---|
1006 | |
---|
1007 | //free memory |
---|
1008 | free_DBA(resiBitLengthArray); |
---|
1009 | free_DIA(exactLeadNumArray); |
---|
1010 | free_DIA(resiBitArray); |
---|
1011 | free(type); |
---|
1012 | |
---|
1013 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
1014 | |
---|
1015 | free(pwrErrBound); |
---|
1016 | |
---|
1017 | free(vce); |
---|
1018 | free(lce); |
---|
1019 | free_TightDataPointStorageD(tdps); |
---|
1020 | free(exactMidByteArray); |
---|
1021 | } |
---|
1022 | |
---|
1023 | void SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr(unsigned char** newByteData, double *oriData, double globalPrecision, |
---|
1024 | size_t r1, size_t r2, size_t r3, size_t *outSize, double min, double max) |
---|
1025 | { |
---|
1026 | size_t dataLength=r1*r2*r3; |
---|
1027 | |
---|
1028 | int blockEdgeSize = computeBlockEdgeSize_3D(confparams_cpr->segment_size); |
---|
1029 | size_t R1 = 1+(r1-1)/blockEdgeSize; |
---|
1030 | size_t R2 = 1+(r2-1)/blockEdgeSize; |
---|
1031 | size_t R3 = 1+(r3-1)/blockEdgeSize; |
---|
1032 | double* pwrErrBound = (double*)malloc(sizeof(double)*R1*R2*R3); |
---|
1033 | size_t pwrErrBoundBytes_size = sizeof(unsigned char)*R1*R2*R3*2; |
---|
1034 | unsigned char* pwrErrBoundBytes = (unsigned char*)malloc(pwrErrBoundBytes_size); |
---|
1035 | |
---|
1036 | compute_segment_precisions_double_3D(oriData, pwrErrBound, r1, r2, r3, R2, R3, blockEdgeSize, pwrErrBoundBytes, min, max, globalPrecision); |
---|
1037 | unsigned int quantization_intervals; |
---|
1038 | if(exe_params->optQuantMode==1) |
---|
1039 | { |
---|
1040 | quantization_intervals = optimize_intervals_double_3D_pwr(oriData, r1, r2, r3, R2, R3, blockEdgeSize, pwrErrBound); |
---|
1041 | updateQuantizationInfo(quantization_intervals); |
---|
1042 | } |
---|
1043 | else |
---|
1044 | quantization_intervals = exe_params->intvCapacity; |
---|
1045 | size_t i=0,j=0,k=0, I = 0, J = 0, K = 0; |
---|
1046 | int reqLength; |
---|
1047 | double realPrecision = pwrErrBound[0]; |
---|
1048 | double pred1D, pred2D, pred3D; |
---|
1049 | double diff = 0.0; |
---|
1050 | double itvNum = 0; |
---|
1051 | double *P0, *P1; |
---|
1052 | |
---|
1053 | size_t r23 = r2*r3; |
---|
1054 | size_t R23 = R2*R3; |
---|
1055 | P0 = (double*)malloc(r23*sizeof(double)); |
---|
1056 | P1 = (double*)malloc(r23*sizeof(double)); |
---|
1057 | double radius = fabs(max)<fabs(min)?fabs(min):fabs(max); |
---|
1058 | double medianValue = 0; |
---|
1059 | short radExpo = getExponent_double(radius); |
---|
1060 | int updateReqLength = 0; |
---|
1061 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1062 | |
---|
1063 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
1064 | //type[dataLength]=0; |
---|
1065 | |
---|
1066 | double* spaceFillingValue = oriData; // |
---|
1067 | |
---|
1068 | DynamicByteArray *resiBitLengthArray; |
---|
1069 | new_DBA(&resiBitLengthArray, DynArrayInitLen); |
---|
1070 | |
---|
1071 | DynamicIntArray *exactLeadNumArray; |
---|
1072 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
1073 | |
---|
1074 | DynamicByteArray *exactMidByteArray; |
---|
1075 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
1076 | |
---|
1077 | DynamicIntArray *resiBitArray; |
---|
1078 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
1079 | |
---|
1080 | type[0] = 0; |
---|
1081 | |
---|
1082 | unsigned char preDataBytes[8]; |
---|
1083 | longToBytes_bigEndian(preDataBytes, 0); |
---|
1084 | |
---|
1085 | int reqBytesLength = reqLength/8; |
---|
1086 | int resiBitsLength = reqLength%8; |
---|
1087 | |
---|
1088 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
1089 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
1090 | |
---|
1091 | |
---|
1092 | /////////////////////////// Process layer-0 /////////////////////////// |
---|
1093 | /* Process Row-0 data 0*/ |
---|
1094 | type[0] = 0; |
---|
1095 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1096 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1097 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1098 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1099 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1100 | P1[0] = vce->data; |
---|
1101 | |
---|
1102 | /* Process Row-0 data 1*/ |
---|
1103 | pred1D = P1[0]; |
---|
1104 | diff = spaceFillingValue[1] - pred1D; |
---|
1105 | |
---|
1106 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1107 | |
---|
1108 | if (itvNum < exe_params->intvCapacity) |
---|
1109 | { |
---|
1110 | if (diff < 0) itvNum = -itvNum; |
---|
1111 | type[1] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1112 | P1[1] = pred1D + 2 * (type[1] - exe_params->intvRadius) * realPrecision; |
---|
1113 | } |
---|
1114 | else |
---|
1115 | { |
---|
1116 | if(updateReqLength==0) |
---|
1117 | { |
---|
1118 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1119 | reqBytesLength = reqLength/8; |
---|
1120 | resiBitsLength = reqLength%8; |
---|
1121 | updateReqLength = 1; |
---|
1122 | } |
---|
1123 | |
---|
1124 | type[1] = 0; |
---|
1125 | |
---|
1126 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1127 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1128 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1129 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1130 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1131 | P1[1] = vce->data; |
---|
1132 | } |
---|
1133 | |
---|
1134 | /* Process Row-0 data 2 --> data r3-1 */ |
---|
1135 | for (j = 2; j < r3; j++) |
---|
1136 | { |
---|
1137 | if(j%blockEdgeSize==0) |
---|
1138 | { |
---|
1139 | J++; |
---|
1140 | realPrecision = pwrErrBound[J]; |
---|
1141 | updateReqLength = 0; |
---|
1142 | } |
---|
1143 | pred1D = 2*P1[j-1] - P1[j-2]; |
---|
1144 | diff = spaceFillingValue[j] - pred1D; |
---|
1145 | |
---|
1146 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1147 | |
---|
1148 | if (itvNum < exe_params->intvCapacity) |
---|
1149 | { |
---|
1150 | if (diff < 0) itvNum = -itvNum; |
---|
1151 | type[j] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1152 | P1[j] = pred1D + 2 * (type[j] - exe_params->intvRadius) * realPrecision; |
---|
1153 | } |
---|
1154 | else |
---|
1155 | { |
---|
1156 | if(updateReqLength==0) |
---|
1157 | { |
---|
1158 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1159 | reqBytesLength = reqLength/8; |
---|
1160 | resiBitsLength = reqLength%8; |
---|
1161 | updateReqLength = 1; |
---|
1162 | } |
---|
1163 | |
---|
1164 | type[j] = 0; |
---|
1165 | |
---|
1166 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1167 | compressSingleDoubleValue(vce, spaceFillingValue[j], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1168 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1169 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1170 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1171 | P1[j] = vce->data; |
---|
1172 | } |
---|
1173 | } |
---|
1174 | |
---|
1175 | /* Process Row-1 --> Row-r2-1 */ |
---|
1176 | size_t index; |
---|
1177 | K = 0; |
---|
1178 | for (i = 1; i < r2; i++) |
---|
1179 | { |
---|
1180 | /* Process row-i data 0 */ |
---|
1181 | index = i*r3; |
---|
1182 | |
---|
1183 | J = 0; |
---|
1184 | if(i%blockEdgeSize==0) |
---|
1185 | I++; |
---|
1186 | realPrecision = pwrErrBound[I*R3+J]; //J==0 |
---|
1187 | updateReqLength = 0; |
---|
1188 | |
---|
1189 | pred1D = P1[index-r3]; |
---|
1190 | diff = spaceFillingValue[index] - pred1D; |
---|
1191 | |
---|
1192 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1193 | |
---|
1194 | if (itvNum < exe_params->intvCapacity) |
---|
1195 | { |
---|
1196 | if (diff < 0) itvNum = -itvNum; |
---|
1197 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1198 | P1[index] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1199 | } |
---|
1200 | else |
---|
1201 | { |
---|
1202 | if(updateReqLength==0) |
---|
1203 | { |
---|
1204 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1205 | reqBytesLength = reqLength/8; |
---|
1206 | resiBitsLength = reqLength%8; |
---|
1207 | updateReqLength = 1; |
---|
1208 | } |
---|
1209 | |
---|
1210 | type[index] = 0; |
---|
1211 | |
---|
1212 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1213 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1214 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1215 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1216 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1217 | P1[index] = vce->data; |
---|
1218 | } |
---|
1219 | |
---|
1220 | /* Process row-i data 1 --> data r3-1*/ |
---|
1221 | for (j = 1; j < r3; j++) //note that this j refers to fastest dimension (lowest order) |
---|
1222 | { |
---|
1223 | index = i*r3+j; |
---|
1224 | if(j%blockEdgeSize==0) |
---|
1225 | { |
---|
1226 | J++; |
---|
1227 | realPrecision = pwrErrBound[I*R3+J]; |
---|
1228 | updateReqLength = 0; |
---|
1229 | } |
---|
1230 | |
---|
1231 | pred2D = P1[index-1] + P1[index-r3] - P1[index-r3-1]; |
---|
1232 | |
---|
1233 | diff = spaceFillingValue[index] - pred2D; |
---|
1234 | |
---|
1235 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1236 | |
---|
1237 | if (itvNum < exe_params->intvCapacity) |
---|
1238 | { |
---|
1239 | if (diff < 0) itvNum = -itvNum; |
---|
1240 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1241 | P1[index] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1242 | } |
---|
1243 | else |
---|
1244 | { |
---|
1245 | if(updateReqLength==0) |
---|
1246 | { |
---|
1247 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1248 | reqBytesLength = reqLength/8; |
---|
1249 | resiBitsLength = reqLength%8; |
---|
1250 | updateReqLength = 1; |
---|
1251 | } |
---|
1252 | |
---|
1253 | type[index] = 0; |
---|
1254 | |
---|
1255 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1256 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1257 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1258 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1259 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1260 | P1[index] = vce->data; |
---|
1261 | } |
---|
1262 | } |
---|
1263 | } |
---|
1264 | |
---|
1265 | |
---|
1266 | /////////////////////////// Process layer-1 --> layer-r1-1 /////////////////////////// |
---|
1267 | |
---|
1268 | for (k = 1; k < r1; k++) |
---|
1269 | { |
---|
1270 | /* Process Row-0 data 0*/ |
---|
1271 | index = k*r23; |
---|
1272 | I = 0; |
---|
1273 | J = 0; |
---|
1274 | if(k%blockEdgeSize==0) |
---|
1275 | K++; |
---|
1276 | realPrecision = pwrErrBound[K*R23]; //J==0 |
---|
1277 | updateReqLength = 0; |
---|
1278 | |
---|
1279 | pred1D = P1[0]; |
---|
1280 | diff = spaceFillingValue[index] - pred1D; |
---|
1281 | |
---|
1282 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1283 | |
---|
1284 | if (itvNum < exe_params->intvCapacity) |
---|
1285 | { |
---|
1286 | if (diff < 0) itvNum = -itvNum; |
---|
1287 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1288 | P0[0] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1289 | } |
---|
1290 | else |
---|
1291 | { |
---|
1292 | if(updateReqLength==0) |
---|
1293 | { |
---|
1294 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1295 | reqBytesLength = reqLength/8; |
---|
1296 | resiBitsLength = reqLength%8; |
---|
1297 | updateReqLength = 1; |
---|
1298 | } |
---|
1299 | |
---|
1300 | type[index] = 0; |
---|
1301 | |
---|
1302 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1303 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1304 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1305 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1306 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1307 | P0[0] = vce->data; |
---|
1308 | } |
---|
1309 | |
---|
1310 | |
---|
1311 | /* Process Row-0 data 1 --> data r3-1 */ |
---|
1312 | for (j = 1; j < r3; j++) |
---|
1313 | { |
---|
1314 | index = k*r23+j; |
---|
1315 | |
---|
1316 | if(j%blockEdgeSize==0) |
---|
1317 | { |
---|
1318 | J++; |
---|
1319 | realPrecision = pwrErrBound[K*R23+J]; |
---|
1320 | updateReqLength = 0; |
---|
1321 | } |
---|
1322 | pred2D = P0[j-1] + P1[j] - P1[j-1]; |
---|
1323 | diff = spaceFillingValue[index] - pred2D; |
---|
1324 | |
---|
1325 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1326 | |
---|
1327 | if (itvNum < exe_params->intvCapacity) |
---|
1328 | { |
---|
1329 | if (diff < 0) itvNum = -itvNum; |
---|
1330 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1331 | P0[j] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1332 | } |
---|
1333 | else |
---|
1334 | { |
---|
1335 | if(updateReqLength==0) |
---|
1336 | { |
---|
1337 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1338 | reqBytesLength = reqLength/8; |
---|
1339 | resiBitsLength = reqLength%8; |
---|
1340 | updateReqLength = 1; |
---|
1341 | } |
---|
1342 | |
---|
1343 | type[index] = 0; |
---|
1344 | |
---|
1345 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1346 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1347 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1348 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1349 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1350 | P0[j] = vce->data; |
---|
1351 | } |
---|
1352 | } |
---|
1353 | |
---|
1354 | /* Process Row-1 --> Row-r2-1 */ |
---|
1355 | size_t index2D; |
---|
1356 | for (i = 1; i < r2; i++) |
---|
1357 | { |
---|
1358 | /* Process Row-i data 0 */ |
---|
1359 | index = k*r23 + i*r3; |
---|
1360 | |
---|
1361 | J = 0; |
---|
1362 | if(i%blockEdgeSize==0) |
---|
1363 | I++; |
---|
1364 | realPrecision = pwrErrBound[K*R23+I*R3+J]; //J==0 |
---|
1365 | updateReqLength = 0; |
---|
1366 | |
---|
1367 | index2D = i*r3; |
---|
1368 | pred2D = P0[index2D-r3] + P1[index2D] - P1[index2D-r3]; |
---|
1369 | diff = spaceFillingValue[index] - pred2D; |
---|
1370 | |
---|
1371 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1372 | |
---|
1373 | if (itvNum < exe_params->intvCapacity) |
---|
1374 | { |
---|
1375 | if (diff < 0) itvNum = -itvNum; |
---|
1376 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1377 | P0[index2D] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1378 | } |
---|
1379 | else |
---|
1380 | { |
---|
1381 | if(updateReqLength==0) |
---|
1382 | { |
---|
1383 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1384 | reqBytesLength = reqLength/8; |
---|
1385 | resiBitsLength = reqLength%8; |
---|
1386 | updateReqLength = 1; |
---|
1387 | } |
---|
1388 | |
---|
1389 | type[index] = 0; |
---|
1390 | |
---|
1391 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1392 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1393 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1394 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1395 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1396 | P0[index2D] = vce->data; |
---|
1397 | } |
---|
1398 | |
---|
1399 | /* Process Row-i data 1 --> data r3-1 */ |
---|
1400 | for (j = 1; j < r3; j++) |
---|
1401 | { |
---|
1402 | index = k*r23 + i*r3 + j; |
---|
1403 | |
---|
1404 | if(j%blockEdgeSize==0) |
---|
1405 | { |
---|
1406 | J++; |
---|
1407 | realPrecision = pwrErrBound[K*R23+I*R3+J]; |
---|
1408 | updateReqLength = 0; |
---|
1409 | } |
---|
1410 | index2D = i*r3 + j; |
---|
1411 | pred3D = P0[index2D-1] + P0[index2D-r3]+ P1[index2D] - P0[index2D-r3-1] - P1[index2D-r3] - P1[index2D-1] + P1[index2D-r3-1]; |
---|
1412 | diff = spaceFillingValue[index] - pred3D; |
---|
1413 | |
---|
1414 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1415 | |
---|
1416 | if (itvNum < exe_params->intvCapacity) |
---|
1417 | { |
---|
1418 | if (diff < 0) itvNum = -itvNum; |
---|
1419 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1420 | P0[index2D] = pred3D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1421 | } |
---|
1422 | else |
---|
1423 | { |
---|
1424 | if(updateReqLength==0) |
---|
1425 | { |
---|
1426 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1427 | reqBytesLength = reqLength/8; |
---|
1428 | resiBitsLength = reqLength%8; |
---|
1429 | updateReqLength = 1; |
---|
1430 | } |
---|
1431 | |
---|
1432 | type[index] = 0; |
---|
1433 | |
---|
1434 | addDBA_Data(resiBitLengthArray, (unsigned char)resiBitsLength); |
---|
1435 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1436 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1437 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1438 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1439 | P0[index2D] = vce->data; |
---|
1440 | } |
---|
1441 | } |
---|
1442 | } |
---|
1443 | |
---|
1444 | double *Pt; |
---|
1445 | Pt = P1; |
---|
1446 | P1 = P0; |
---|
1447 | P0 = Pt; |
---|
1448 | } |
---|
1449 | if(r23!=1) |
---|
1450 | free(P0); |
---|
1451 | free(P1); |
---|
1452 | int exactDataNum = exactLeadNumArray->size; |
---|
1453 | |
---|
1454 | TightDataPointStorageD* tdps; |
---|
1455 | |
---|
1456 | new_TightDataPointStorageD2(&tdps, dataLength, exactDataNum, |
---|
1457 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
1458 | exactLeadNumArray->array, |
---|
1459 | resiBitArray->array, resiBitArray->size, |
---|
1460 | resiBitLengthArray->array, resiBitLengthArray->size, |
---|
1461 | realPrecision, medianValue, (char)reqLength, quantization_intervals, pwrErrBoundBytes, pwrErrBoundBytes_size, radExpo); |
---|
1462 | |
---|
1463 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
1464 | |
---|
1465 | //free memory |
---|
1466 | free_DBA(resiBitLengthArray); |
---|
1467 | free_DIA(exactLeadNumArray); |
---|
1468 | free_DIA(resiBitArray); |
---|
1469 | free(type); |
---|
1470 | |
---|
1471 | free(pwrErrBound); |
---|
1472 | |
---|
1473 | free(vce); |
---|
1474 | free(lce); |
---|
1475 | free_TightDataPointStorageD(tdps); |
---|
1476 | free(exactMidByteArray); |
---|
1477 | } |
---|
1478 | |
---|
1479 | void createRangeGroups_double(double** posGroups, double** negGroups, int** posFlags, int** negFlags) |
---|
1480 | { |
---|
1481 | size_t size = GROUP_COUNT*sizeof(double); |
---|
1482 | size_t size2 = GROUP_COUNT*sizeof(int); |
---|
1483 | *posGroups = (double*)malloc(size); |
---|
1484 | *negGroups = (double*)malloc(size); |
---|
1485 | *posFlags = (int*)malloc(size2); |
---|
1486 | *negFlags = (int*)malloc(size2); |
---|
1487 | memset(*posGroups, 0, size); |
---|
1488 | memset(*negGroups, 0, size); |
---|
1489 | memset(*posFlags, 0, size2); |
---|
1490 | memset(*negFlags, 0, size2); |
---|
1491 | } |
---|
1492 | |
---|
1493 | void compressGroupIDArray_double(char* groupID, TightDataPointStorageD* tdps) |
---|
1494 | { |
---|
1495 | size_t dataLength = tdps->dataSeriesLength; |
---|
1496 | int* standGroupID = (int*)malloc(dataLength*sizeof(int)); |
---|
1497 | |
---|
1498 | size_t i; |
---|
1499 | standGroupID[0] = groupID[0]+GROUP_COUNT; //plus an offset such that it would not be a negative number. |
---|
1500 | char lastGroupIDValue = groupID[0], curGroupIDValue; |
---|
1501 | int offset = 2*(GROUP_COUNT + 2); |
---|
1502 | for(i=1; i<dataLength;i++) |
---|
1503 | { |
---|
1504 | curGroupIDValue = groupID[i]; |
---|
1505 | standGroupID[i] = (curGroupIDValue - lastGroupIDValue) + offset; |
---|
1506 | lastGroupIDValue = curGroupIDValue; |
---|
1507 | } |
---|
1508 | |
---|
1509 | unsigned char* out = NULL; |
---|
1510 | size_t outSize; |
---|
1511 | |
---|
1512 | HuffmanTree* huffmanTree = SZ_Reset(); |
---|
1513 | encode_withTree(huffmanTree, standGroupID, dataLength, &out, &outSize); |
---|
1514 | SZ_ReleaseHuffman(huffmanTree); |
---|
1515 | |
---|
1516 | tdps->pwrErrBoundBytes = out; //groupIDArray |
---|
1517 | tdps->pwrErrBoundBytes_size = outSize; |
---|
1518 | |
---|
1519 | free(standGroupID); |
---|
1520 | } |
---|
1521 | |
---|
1522 | TightDataPointStorageD* SZ_compress_double_1D_MDQ_pwrGroup(double* oriData, size_t dataLength, int errBoundMode, |
---|
1523 | double absErrBound, double relBoundRatio, double pwrErrRatio, double valueRangeSize, double medianValue_f) |
---|
1524 | { |
---|
1525 | size_t i; |
---|
1526 | double *posGroups, *negGroups, *groups; |
---|
1527 | double pos_01_group = 0, neg_01_group = 0; //[0,1] and [-1,0] |
---|
1528 | int *posFlags, *negFlags, *flags; |
---|
1529 | int pos_01_flag = 0, neg_01_flag = 0; |
---|
1530 | createRangeGroups_double(&posGroups, &negGroups, &posFlags, &negFlags); |
---|
1531 | size_t nbBins = (size_t)(1/pwrErrRatio); |
---|
1532 | if(nbBins%2==1) |
---|
1533 | nbBins++; |
---|
1534 | exe_params->intvRadius = nbBins; |
---|
1535 | |
---|
1536 | int reqLength, status; |
---|
1537 | double medianValue = medianValue_f; |
---|
1538 | double realPrecision = (double)getRealPrecision_double(valueRangeSize, errBoundMode, absErrBound, relBoundRatio, &status); |
---|
1539 | if(realPrecision<0) |
---|
1540 | realPrecision = pwrErrRatio; |
---|
1541 | double realGroupPrecision; //precision (error) based on group ID |
---|
1542 | getPrecisionReqLength_double(realPrecision); |
---|
1543 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
1544 | short lastGroupNum = 0, groupNum, grpNum = 0; |
---|
1545 | |
---|
1546 | double* groupErrorBounds = generateGroupErrBounds(errBoundMode, realPrecision, pwrErrRatio); |
---|
1547 | exe_params->intvRadius = generateGroupMaxIntervalCount(groupErrorBounds); |
---|
1548 | |
---|
1549 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1550 | |
---|
1551 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
1552 | char *groupID = (char*) malloc(dataLength*sizeof(char)); |
---|
1553 | char *gp = groupID; |
---|
1554 | |
---|
1555 | double* spaceFillingValue = oriData; |
---|
1556 | |
---|
1557 | DynamicIntArray *exactLeadNumArray; |
---|
1558 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
1559 | |
---|
1560 | DynamicByteArray *exactMidByteArray; |
---|
1561 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
1562 | |
---|
1563 | DynamicIntArray *resiBitArray; |
---|
1564 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
1565 | |
---|
1566 | unsigned char preDataBytes[8]; |
---|
1567 | intToBytes_bigEndian(preDataBytes, 0); |
---|
1568 | |
---|
1569 | int reqBytesLength = reqLength/8; |
---|
1570 | int resiBitsLength = reqLength%8; |
---|
1571 | |
---|
1572 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
1573 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
1574 | |
---|
1575 | int state; |
---|
1576 | double curData, decValue; |
---|
1577 | double pred; |
---|
1578 | double predAbsErr; |
---|
1579 | double interval = 0; |
---|
1580 | |
---|
1581 | //add the first data |
---|
1582 | type[0] = 0; |
---|
1583 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1584 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1585 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1586 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1587 | |
---|
1588 | curData = spaceFillingValue[0]; |
---|
1589 | groupNum = computeGroupNum_double(vce->data); |
---|
1590 | |
---|
1591 | if(curData > 0 && groupNum >= 0) |
---|
1592 | { |
---|
1593 | groups = posGroups; |
---|
1594 | flags = posFlags; |
---|
1595 | grpNum = groupNum; |
---|
1596 | } |
---|
1597 | else if(curData < 0 && groupNum >= 0) |
---|
1598 | { |
---|
1599 | groups = negGroups; |
---|
1600 | flags = negFlags; |
---|
1601 | grpNum = groupNum; |
---|
1602 | } |
---|
1603 | else if(curData >= 0 && groupNum == -1) |
---|
1604 | { |
---|
1605 | groups = &pos_01_group; |
---|
1606 | flags = &pos_01_flag; |
---|
1607 | grpNum = 0; |
---|
1608 | } |
---|
1609 | else //curData < 0 && groupNum == -1 |
---|
1610 | { |
---|
1611 | groups = &neg_01_group; |
---|
1612 | flags = &neg_01_flag; |
---|
1613 | grpNum = 0; |
---|
1614 | } |
---|
1615 | |
---|
1616 | listAdd_double_group(groups, flags, groupNum, spaceFillingValue[0], vce->data, gp); |
---|
1617 | gp++; |
---|
1618 | |
---|
1619 | for(i=1;i<dataLength;i++) |
---|
1620 | { |
---|
1621 | curData = oriData[i]; |
---|
1622 | //printf("i=%d, posGroups[3]=%f, negGroups[3]=%f\n", i, posGroups[3], negGroups[3]); |
---|
1623 | |
---|
1624 | groupNum = computeGroupNum_double(curData); |
---|
1625 | |
---|
1626 | if(curData > 0 && groupNum >= 0) |
---|
1627 | { |
---|
1628 | groups = posGroups; |
---|
1629 | flags = posFlags; |
---|
1630 | grpNum = groupNum; |
---|
1631 | } |
---|
1632 | else if(curData < 0 && groupNum >= 0) |
---|
1633 | { |
---|
1634 | groups = negGroups; |
---|
1635 | flags = negFlags; |
---|
1636 | grpNum = groupNum; |
---|
1637 | } |
---|
1638 | else if(curData >= 0 && groupNum == -1) |
---|
1639 | { |
---|
1640 | groups = &pos_01_group; |
---|
1641 | flags = &pos_01_flag; |
---|
1642 | grpNum = 0; |
---|
1643 | } |
---|
1644 | else //curData < 0 && groupNum == -1 |
---|
1645 | { |
---|
1646 | groups = &neg_01_group; |
---|
1647 | flags = &neg_01_flag; |
---|
1648 | grpNum = 0; |
---|
1649 | } |
---|
1650 | |
---|
1651 | if(groupNum>=GROUP_COUNT) |
---|
1652 | { |
---|
1653 | type[i] = 0; |
---|
1654 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1655 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1656 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1657 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1658 | listAdd_double_group(groups, flags, lastGroupNum, curData, vce->data, gp); //set the group number to be last one in order to get the groupID array as smooth as possible. |
---|
1659 | } |
---|
1660 | else if(flags[grpNum]==0) //the dec value may not be in the same group |
---|
1661 | { |
---|
1662 | type[i] = 0; |
---|
1663 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1664 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1665 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1666 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1667 | //decGroupNum = computeGroupNum_double(vce->data); |
---|
1668 | |
---|
1669 | //if(decGroupNum < groupNum) |
---|
1670 | // decValue = curData>0?pow(2, groupNum):-pow(2, groupNum); |
---|
1671 | //else if(decGroupNum > groupNum) |
---|
1672 | // decValue = curData>0?pow(2, groupNum+1):-pow(2, groupNum+1); |
---|
1673 | //else |
---|
1674 | // decValue = vce->data; |
---|
1675 | |
---|
1676 | decValue = vce->data; |
---|
1677 | listAdd_double_group(groups, flags, groupNum, curData, decValue, gp); |
---|
1678 | lastGroupNum = curData>0?groupNum + 2: -(groupNum+2); |
---|
1679 | } |
---|
1680 | else //if flags[groupNum]==1, the dec value must be in the same group |
---|
1681 | { |
---|
1682 | pred = groups[grpNum]; |
---|
1683 | predAbsErr = fabs(curData - pred); |
---|
1684 | realGroupPrecision = groupErrorBounds[grpNum]; //compute real error bound |
---|
1685 | interval = realGroupPrecision*2; |
---|
1686 | state = (predAbsErr/realGroupPrecision+1)/2; |
---|
1687 | if(curData>=pred) |
---|
1688 | { |
---|
1689 | type[i] = exe_params->intvRadius+state; |
---|
1690 | decValue = pred + state*interval; |
---|
1691 | } |
---|
1692 | else //curData<pred |
---|
1693 | { |
---|
1694 | type[i] = exe_params->intvRadius-state; |
---|
1695 | decValue = pred - state*interval; |
---|
1696 | } |
---|
1697 | //decGroupNum = computeGroupNum_double(pred); |
---|
1698 | |
---|
1699 | if((decValue>0&&curData<0)||(decValue<0&&curData>=0)) |
---|
1700 | decValue = 0; |
---|
1701 | //else |
---|
1702 | //{ |
---|
1703 | // if(decGroupNum < groupNum) |
---|
1704 | // decValue = curData>0?pow(2, groupNum):-pow(2, groupNum); |
---|
1705 | // else if(decGroupNum > groupNum) |
---|
1706 | // decValue = curData>0?pow(2, groupNum+1):-pow(2, groupNum+1); |
---|
1707 | // else |
---|
1708 | // decValue = pred; |
---|
1709 | //} |
---|
1710 | |
---|
1711 | if(fabs(curData-decValue)>realGroupPrecision) |
---|
1712 | { |
---|
1713 | type[i] = 0; |
---|
1714 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1715 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1716 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1717 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1718 | |
---|
1719 | decValue = vce->data; |
---|
1720 | } |
---|
1721 | |
---|
1722 | listAdd_double_group(groups, flags, groupNum, curData, decValue, gp); |
---|
1723 | lastGroupNum = curData>=0?groupNum + 2: -(groupNum+2); |
---|
1724 | } |
---|
1725 | gp++; |
---|
1726 | |
---|
1727 | } |
---|
1728 | |
---|
1729 | int exactDataNum = exactLeadNumArray->size; |
---|
1730 | |
---|
1731 | TightDataPointStorageD* tdps; |
---|
1732 | |
---|
1733 | //combineTypeAndGroupIDArray(nbBins, dataLength, &type, groupID); |
---|
1734 | |
---|
1735 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
1736 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
1737 | exactLeadNumArray->array, |
---|
1738 | resiBitArray->array, resiBitArray->size, |
---|
1739 | resiBitsLength, |
---|
1740 | realPrecision, medianValue, (char)reqLength, nbBins, NULL, 0, radExpo); |
---|
1741 | |
---|
1742 | compressGroupIDArray_double(groupID, tdps); |
---|
1743 | |
---|
1744 | free(posGroups); |
---|
1745 | free(negGroups); |
---|
1746 | free(posFlags); |
---|
1747 | free(negFlags); |
---|
1748 | free(groupID); |
---|
1749 | free(groupErrorBounds); |
---|
1750 | |
---|
1751 | free_DIA(exactLeadNumArray); |
---|
1752 | free_DIA(resiBitArray); |
---|
1753 | free(type); |
---|
1754 | free(vce); |
---|
1755 | free(lce); |
---|
1756 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
1757 | |
---|
1758 | return tdps; |
---|
1759 | } |
---|
1760 | |
---|
1761 | void SZ_compress_args_double_NoCkRngeNoGzip_1D_pwrgroup(unsigned char** newByteData, double *oriData, |
---|
1762 | size_t dataLength, double absErrBound, double relBoundRatio, double pwrErrRatio, double valueRangeSize, double medianValue_f, size_t *outSize) |
---|
1763 | { |
---|
1764 | TightDataPointStorageD* tdps = SZ_compress_double_1D_MDQ_pwrGroup(oriData, dataLength, confparams_cpr->errorBoundMode, |
---|
1765 | absErrBound, relBoundRatio, pwrErrRatio, |
---|
1766 | valueRangeSize, medianValue_f); |
---|
1767 | |
---|
1768 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
1769 | |
---|
1770 | if(*outSize>dataLength*sizeof(double)) |
---|
1771 | SZ_compress_args_double_StoreOriData(oriData, dataLength+2, tdps, newByteData, outSize); |
---|
1772 | |
---|
1773 | free_TightDataPointStorageD(tdps); |
---|
1774 | } |
---|