1 | /** |
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2 | * @file sz_double.c |
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3 | * @author Sheng Di and Dingwen Tao |
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4 | * @date Aug, 2016 |
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5 | * @brief SZ_Init, Compression and Decompression functions |
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6 | * (C) 2016 by Mathematics and Computer Science (MCS), Argonne National Laboratory. |
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7 | * See COPYRIGHT in top-level directory. |
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8 | */ |
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9 | |
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10 | |
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11 | #include <stdio.h> |
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12 | #include <stdlib.h> |
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13 | #include <string.h> |
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14 | #include <unistd.h> |
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15 | #include <math.h> |
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16 | #include "sz.h" |
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17 | #include "CompressElement.h" |
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18 | #include "DynamicByteArray.h" |
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19 | #include "DynamicIntArray.h" |
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20 | #include "TightDataPointStorageD.h" |
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21 | #include "sz_double.h" |
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22 | #include "sz_double_pwr.h" |
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23 | #include "szd_double.h" |
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24 | #include "szd_double_pwr.h" |
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25 | #include "zlib.h" |
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26 | #include "rw.h" |
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27 | #include "sz_double_ts.h" |
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28 | #include "utility.h" |
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29 | |
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30 | unsigned char* SZ_skip_compress_double(double* data, size_t dataLength, size_t* outSize) |
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31 | { |
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32 | *outSize = dataLength*sizeof(double); |
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33 | unsigned char* out = (unsigned char*)malloc(dataLength*sizeof(double)); |
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34 | memcpy(out, data, dataLength*sizeof(double)); |
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35 | return out; |
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36 | } |
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37 | |
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38 | void computeReqLength_double(double realPrecision, short radExpo, int* reqLength, double* medianValue) |
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39 | { |
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40 | short reqExpo = getPrecisionReqLength_double(realPrecision); |
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41 | *reqLength = 12+radExpo - reqExpo; //radExpo-reqExpo == reqMantiLength |
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42 | if(*reqLength<12) |
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43 | *reqLength = 12; |
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44 | if(*reqLength>64) |
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45 | { |
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46 | *reqLength = 64; |
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47 | *medianValue = 0; |
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48 | } |
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49 | } |
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50 | |
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51 | unsigned int optimize_intervals_double_1D(double *oriData, size_t dataLength, double realPrecision) |
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52 | { |
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53 | size_t i = 0, radiusIndex; |
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54 | double pred_value = 0, pred_err; |
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55 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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56 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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57 | size_t totalSampleSize = dataLength/confparams_cpr->sampleDistance; |
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58 | for(i=2;i<dataLength;i++) |
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59 | { |
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60 | if(i%confparams_cpr->sampleDistance==0) |
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61 | { |
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62 | //pred_value = 2*oriData[i-1] - oriData[i-2]; |
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63 | pred_value = oriData[i-1]; |
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64 | pred_err = fabs(pred_value - oriData[i]); |
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65 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
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66 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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67 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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68 | intervals[radiusIndex]++; |
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69 | } |
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70 | } |
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71 | //compute the appropriate number |
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72 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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73 | size_t sum = 0; |
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74 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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75 | { |
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76 | sum += intervals[i]; |
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77 | if(sum>targetCount) |
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78 | break; |
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79 | } |
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80 | |
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81 | if(i>=confparams_cpr->maxRangeRadius) |
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82 | i = confparams_cpr->maxRangeRadius-1; |
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83 | unsigned int accIntervals = 2*(i+1); |
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84 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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85 | |
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86 | if(powerOf2<32) |
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87 | powerOf2 = 32; |
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88 | |
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89 | free(intervals); |
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90 | //printf("accIntervals=%d, powerOf2=%d\n", accIntervals, powerOf2); |
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91 | return powerOf2; |
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92 | } |
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93 | |
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94 | unsigned int optimize_intervals_double_2D(double *oriData, size_t r1, size_t r2, double realPrecision) |
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95 | { |
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96 | size_t i,j, index; |
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97 | size_t radiusIndex; |
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98 | double pred_value = 0, pred_err; |
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99 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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100 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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101 | size_t totalSampleSize = (r1-1)*(r2-1)/confparams_cpr->sampleDistance; |
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102 | for(i=1;i<r1;i++) |
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103 | { |
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104 | for(j=1;j<r2;j++) |
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105 | { |
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106 | if((i+j)%confparams_cpr->sampleDistance==0) |
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107 | { |
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108 | index = i*r2+j; |
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109 | pred_value = oriData[index-1] + oriData[index-r2] - oriData[index-r2-1]; |
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110 | pred_err = fabs(pred_value - oriData[index]); |
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111 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
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112 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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113 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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114 | intervals[radiusIndex]++; |
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115 | } |
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116 | } |
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117 | } |
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118 | //compute the appropriate number |
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119 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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120 | size_t sum = 0; |
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121 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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122 | { |
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123 | sum += intervals[i]; |
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124 | if(sum>targetCount) |
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125 | break; |
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126 | } |
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127 | if(i>=confparams_cpr->maxRangeRadius) |
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128 | i = confparams_cpr->maxRangeRadius-1; |
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129 | unsigned int accIntervals = 2*(i+1); |
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130 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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131 | //printf("confparams_cpr->maxRangeRadius = %d, accIntervals=%d, powerOf2=%d\n", confparams_cpr->maxRangeRadius, accIntervals, powerOf2); |
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132 | |
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133 | if(powerOf2<32) |
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134 | powerOf2 = 32; |
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135 | |
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136 | free(intervals); |
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137 | return powerOf2; |
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138 | } |
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139 | |
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140 | unsigned int optimize_intervals_double_3D(double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision) |
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141 | { |
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142 | size_t i,j,k, index; |
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143 | size_t radiusIndex; |
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144 | size_t r23=r2*r3; |
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145 | double pred_value = 0, pred_err; |
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146 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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147 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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148 | size_t totalSampleSize = (r1-1)*(r2-1)*(r3-1)/confparams_cpr->sampleDistance; |
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149 | for(i=1;i<r1;i++) |
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150 | { |
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151 | for(j=1;j<r2;j++) |
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152 | { |
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153 | for(k=1;k<r3;k++) |
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154 | { |
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155 | if((i+j+k)%confparams_cpr->sampleDistance==0) |
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156 | { |
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157 | index = i*r23+j*r3+k; |
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158 | pred_value = oriData[index-1] + oriData[index-r3] + oriData[index-r23] |
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159 | - oriData[index-1-r23] - oriData[index-r3-1] - oriData[index-r3-r23] + oriData[index-r3-r23-1]; |
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160 | pred_err = fabs(pred_value - oriData[index]); |
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161 | radiusIndex = (pred_err/realPrecision+1)/2; |
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162 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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163 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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164 | intervals[radiusIndex]++; |
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165 | } |
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166 | } |
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167 | |
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168 | } |
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169 | } |
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170 | //compute the appropriate number |
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171 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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172 | size_t sum = 0; |
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173 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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174 | { |
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175 | sum += intervals[i]; |
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176 | if(sum>targetCount) |
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177 | break; |
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178 | } |
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179 | if(i>=confparams_cpr->maxRangeRadius) |
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180 | i = confparams_cpr->maxRangeRadius-1; |
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181 | |
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182 | unsigned int accIntervals = 2*(i+1); |
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183 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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184 | |
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185 | if(powerOf2<32) |
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186 | powerOf2 = 32; |
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187 | |
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188 | free(intervals); |
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189 | //printf("confparams_cpr->maxRangeRadius = %d, accIntervals=%d, powerOf2=%d\n", confparams_cpr->maxRangeRadius, accIntervals, powerOf2); |
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190 | return powerOf2; |
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191 | } |
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192 | |
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193 | unsigned int optimize_intervals_double_4D(double *oriData, size_t r1, size_t r2, size_t r3, size_t r4, double realPrecision) |
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194 | { |
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195 | size_t i,j,k,l, index; |
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196 | size_t radiusIndex; |
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197 | size_t r234=r2*r3*r4; |
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198 | size_t r34=r3*r4; |
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199 | double pred_value = 0, pred_err; |
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200 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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201 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
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202 | size_t totalSampleSize = (r1-1)*(r2-1)*(r3-1)*(r4-1)/confparams_cpr->sampleDistance; |
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203 | for(i=1;i<r1;i++) |
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204 | { |
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205 | for(j=1;j<r2;j++) |
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206 | { |
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207 | for(k=1;k<r3;k++) |
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208 | { |
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209 | for (l=1;l<r4;l++) |
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210 | { |
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211 | if((i+j+k+l)%confparams_cpr->sampleDistance==0) |
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212 | { |
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213 | index = i*r234+j*r34+k*r4+l; |
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214 | pred_value = oriData[index-1] + oriData[index-r3] + oriData[index-r34] |
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215 | - oriData[index-1-r34] - oriData[index-r4-1] - oriData[index-r4-r34] + oriData[index-r4-r34-1]; |
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216 | pred_err = fabs(pred_value - oriData[index]); |
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217 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
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218 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
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219 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
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220 | intervals[radiusIndex]++; |
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221 | } |
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222 | } |
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223 | } |
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224 | } |
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225 | } |
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226 | //compute the appropriate number |
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227 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
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228 | size_t sum = 0; |
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229 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
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230 | { |
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231 | sum += intervals[i]; |
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232 | if(sum>targetCount) |
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233 | break; |
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234 | } |
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235 | if(i>=confparams_cpr->maxRangeRadius) |
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236 | i = confparams_cpr->maxRangeRadius-1; |
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237 | |
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238 | unsigned int accIntervals = 2*(i+1); |
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239 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
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240 | |
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241 | if(powerOf2<32) |
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242 | powerOf2 = 32; |
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243 | |
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244 | free(intervals); |
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245 | return powerOf2; |
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246 | } |
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247 | |
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248 | TightDataPointStorageD* SZ_compress_double_1D_MDQ(double *oriData, |
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249 | size_t dataLength, double realPrecision, double valueRangeSize, double medianValue_d) |
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250 | { |
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251 | #ifdef HAVE_TIMECMPR |
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252 | double* decData = NULL; |
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253 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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254 | decData = (double*)(multisteps->hist_data); |
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255 | #endif |
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256 | |
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257 | unsigned int quantization_intervals; |
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258 | if(exe_params->optQuantMode==1) |
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259 | quantization_intervals = optimize_intervals_double_1D_opt(oriData, dataLength, realPrecision); |
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260 | else |
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261 | quantization_intervals = exe_params->intvCapacity; |
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262 | updateQuantizationInfo(quantization_intervals); |
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263 | |
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264 | size_t i; |
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265 | int reqLength; |
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266 | double medianValue = medianValue_d; |
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267 | short radExpo = getExponent_double(valueRangeSize/2); |
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268 | |
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269 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
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270 | |
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271 | int* type = (int*) malloc(dataLength*sizeof(int)); |
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272 | |
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273 | double* spaceFillingValue = oriData; // |
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274 | |
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275 | DynamicIntArray *exactLeadNumArray; |
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276 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
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277 | |
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278 | DynamicByteArray *exactMidByteArray; |
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279 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
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280 | |
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281 | DynamicIntArray *resiBitArray; |
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282 | new_DIA(&resiBitArray, DynArrayInitLen); |
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283 | |
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284 | unsigned char preDataBytes[8]; |
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285 | longToBytes_bigEndian(preDataBytes, 0); |
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286 | |
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287 | int reqBytesLength = reqLength/8; |
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288 | int resiBitsLength = reqLength%8; |
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289 | double last3CmprsData[3] = {0}; |
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290 | |
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291 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
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292 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
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293 | |
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294 | //add the first data |
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295 | type[0] = 0; |
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296 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
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297 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
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298 | memcpy(preDataBytes,vce->curBytes,8); |
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299 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
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300 | listAdd_double(last3CmprsData, vce->data); |
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301 | #ifdef HAVE_TIMECMPR |
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302 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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303 | decData[0] = vce->data; |
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304 | #endif |
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305 | |
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306 | //add the second data |
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307 | type[1] = 0; |
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308 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
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309 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
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310 | memcpy(preDataBytes,vce->curBytes,8); |
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311 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
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312 | listAdd_double(last3CmprsData, vce->data); |
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313 | #ifdef HAVE_TIMECMPR |
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314 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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315 | decData[1] = vce->data; |
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316 | #endif |
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317 | int state; |
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318 | double checkRadius; |
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319 | double curData; |
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320 | double pred; |
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321 | double predAbsErr; |
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322 | checkRadius = (exe_params->intvCapacity-1)*realPrecision; |
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323 | double interval = 2*realPrecision; |
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324 | |
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325 | for(i=2;i<dataLength;i++) |
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326 | { |
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327 | //printf("%.30G\n",last3CmprsData[0]); |
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328 | curData = spaceFillingValue[i]; |
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329 | //pred = 2*last3CmprsData[0] - last3CmprsData[1]; |
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330 | pred = last3CmprsData[0]; |
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331 | predAbsErr = fabs(curData - pred); |
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332 | if(predAbsErr<checkRadius) |
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333 | { |
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334 | state = (predAbsErr/realPrecision+1)/2; |
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335 | if(curData>=pred) |
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336 | { |
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337 | type[i] = exe_params->intvRadius+state; |
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338 | pred = pred + state*interval; |
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339 | } |
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340 | else //curData<pred |
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341 | { |
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342 | type[i] = exe_params->intvRadius-state; |
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343 | pred = pred - state*interval; |
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344 | } |
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345 | listAdd_double(last3CmprsData, pred); |
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346 | #ifdef HAVE_TIMECMPR |
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347 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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348 | decData[i] = pred; |
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349 | #endif |
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350 | continue; |
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351 | } |
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352 | |
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353 | //unpredictable data processing |
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354 | type[i] = 0; |
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355 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
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356 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
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357 | memcpy(preDataBytes,vce->curBytes,8); |
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358 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
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359 | |
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360 | listAdd_double(last3CmprsData, vce->data); |
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361 | #ifdef HAVE_TIMECMPR |
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362 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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363 | decData[i] = vce->data; |
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364 | #endif |
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365 | |
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366 | }//end of for |
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367 | |
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368 | int exactDataNum = exactLeadNumArray->size; |
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369 | |
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370 | TightDataPointStorageD* tdps; |
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371 | |
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372 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
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373 | type, exactMidByteArray->array, exactMidByteArray->size, |
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374 | exactLeadNumArray->array, |
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375 | resiBitArray->array, resiBitArray->size, |
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376 | resiBitsLength, |
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377 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
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378 | |
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379 | // printf("exactDataNum=%d, expSegmentsInBytes_size=%d, exactMidByteArray->size=%d\n", |
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380 | // exactDataNum, expSegmentsInBytes_size, exactMidByteArray->size); |
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381 | |
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382 | //free memory |
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383 | free_DIA(exactLeadNumArray); |
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384 | free_DIA(resiBitArray); |
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385 | free(type); |
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386 | free(vce); |
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387 | free(lce); |
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388 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
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389 | |
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390 | return tdps; |
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391 | } |
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392 | |
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393 | void SZ_compress_args_double_StoreOriData(double* oriData, size_t dataLength, TightDataPointStorageD* tdps, |
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394 | unsigned char** newByteData, size_t *outSize) |
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395 | { |
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396 | int doubleSize = sizeof(double); |
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397 | size_t k = 0, i; |
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398 | tdps->isLossless = 1; |
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399 | size_t totalByteLength = 3 + MetaDataByteLength + exe_params->SZ_SIZE_TYPE + 1 + doubleSize*dataLength; |
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400 | *newByteData = (unsigned char*)malloc(totalByteLength); |
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401 | |
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402 | unsigned char dsLengthBytes[8]; |
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403 | for (i = 0; i < 3; i++)//3 |
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404 | (*newByteData)[k++] = versionNumber[i]; |
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405 | |
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406 | if(exe_params->SZ_SIZE_TYPE==4)//1 |
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407 | (*newByteData)[k++] = 16; //00010000 |
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408 | else |
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409 | (*newByteData)[k++] = 80; //01010000: 01000000 indicates the SZ_SIZE_TYPE=8 |
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410 | |
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411 | convertSZParamsToBytes(confparams_cpr, &((*newByteData)[k])); |
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412 | k = k + MetaDataByteLength; |
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413 | |
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414 | sizeToBytes(dsLengthBytes,dataLength); |
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415 | for (i = 0; i < exe_params->SZ_SIZE_TYPE; i++)//ST: 4 or 8 |
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416 | (*newByteData)[k++] = dsLengthBytes[i]; |
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417 | |
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418 | if(sysEndianType==BIG_ENDIAN_SYSTEM) |
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419 | memcpy((*newByteData)+4+MetaDataByteLength+exe_params->SZ_SIZE_TYPE, oriData, dataLength*doubleSize); |
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420 | else |
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421 | { |
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422 | unsigned char* p = (*newByteData)+4+MetaDataByteLength+exe_params->SZ_SIZE_TYPE; |
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423 | for(i=0;i<dataLength;i++,p+=doubleSize) |
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424 | doubleToBytes(p, oriData[i]); |
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425 | } |
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426 | *outSize = totalByteLength; |
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427 | } |
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428 | |
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429 | |
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430 | char SZ_compress_args_double_NoCkRngeNoGzip_1D(unsigned char** newByteData, double *oriData, |
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431 | size_t dataLength, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d) |
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432 | { |
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433 | char compressionType = 0; |
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434 | TightDataPointStorageD* tdps = NULL; |
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435 | #ifdef HAVE_TIMECMPR |
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436 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
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437 | { |
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438 | int timestep = sz_tsc->currentStep; |
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439 | if(timestep % confparams_cpr->snapshotCmprStep != 0) |
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440 | { |
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441 | tdps = SZ_compress_double_1D_MDQ_ts(oriData, dataLength, multisteps, realPrecision, valueRangeSize, medianValue_d); |
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442 | compressionType = 1; //time-series based compression |
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443 | } |
---|
444 | else |
---|
445 | { |
---|
446 | tdps = SZ_compress_double_1D_MDQ(oriData, dataLength, realPrecision, valueRangeSize, medianValue_d); |
---|
447 | compressionType = 0; //snapshot-based compression |
---|
448 | multisteps->lastSnapshotStep = timestep; |
---|
449 | } |
---|
450 | } |
---|
451 | else |
---|
452 | #endif |
---|
453 | tdps = SZ_compress_double_1D_MDQ(oriData, dataLength, realPrecision, valueRangeSize, medianValue_d); |
---|
454 | |
---|
455 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
456 | |
---|
457 | if(*outSize>dataLength*sizeof(double)) |
---|
458 | SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
459 | |
---|
460 | free_TightDataPointStorageD(tdps); |
---|
461 | return compressionType; |
---|
462 | } |
---|
463 | |
---|
464 | TightDataPointStorageD* SZ_compress_double_2D_MDQ(double *oriData, size_t r1, size_t r2, double realPrecision, double valueRangeSize, double medianValue_d) |
---|
465 | { |
---|
466 | #ifdef HAVE_TIMECMPR |
---|
467 | double* decData = NULL; |
---|
468 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
469 | decData = (double*)(multisteps->hist_data); |
---|
470 | #endif |
---|
471 | |
---|
472 | unsigned int quantization_intervals; |
---|
473 | if(exe_params->optQuantMode==1) |
---|
474 | { |
---|
475 | quantization_intervals = optimize_intervals_double_2D_opt(oriData, r1, r2, realPrecision); |
---|
476 | updateQuantizationInfo(quantization_intervals); |
---|
477 | } |
---|
478 | else |
---|
479 | quantization_intervals = exe_params->intvCapacity; |
---|
480 | size_t i,j; |
---|
481 | int reqLength; |
---|
482 | double pred1D, pred2D; |
---|
483 | double diff = 0.0; |
---|
484 | double itvNum = 0; |
---|
485 | double *P0, *P1; |
---|
486 | |
---|
487 | size_t dataLength = r1*r2; |
---|
488 | |
---|
489 | P0 = (double*)malloc(r2*sizeof(double)); |
---|
490 | memset(P0, 0, r2*sizeof(double)); |
---|
491 | P1 = (double*)malloc(r2*sizeof(double)); |
---|
492 | memset(P1, 0, r2*sizeof(double)); |
---|
493 | |
---|
494 | double medianValue = medianValue_d; |
---|
495 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
496 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
497 | |
---|
498 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
499 | //type[dataLength]=0; |
---|
500 | |
---|
501 | double* spaceFillingValue = oriData; // |
---|
502 | |
---|
503 | DynamicIntArray *exactLeadNumArray; |
---|
504 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
505 | |
---|
506 | DynamicByteArray *exactMidByteArray; |
---|
507 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
508 | |
---|
509 | DynamicIntArray *resiBitArray; |
---|
510 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
511 | |
---|
512 | type[0] = 0; |
---|
513 | |
---|
514 | unsigned char preDataBytes[8]; |
---|
515 | longToBytes_bigEndian(preDataBytes, 0); |
---|
516 | |
---|
517 | int reqBytesLength = reqLength/8; |
---|
518 | int resiBitsLength = reqLength%8; |
---|
519 | |
---|
520 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
521 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
522 | |
---|
523 | /* Process Row-0 data 0*/ |
---|
524 | type[0] = 0; |
---|
525 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
526 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
527 | memcpy(preDataBytes,vce->curBytes,8); |
---|
528 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
529 | P1[0] = vce->data; |
---|
530 | #ifdef HAVE_TIMECMPR |
---|
531 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
532 | decData[0] = vce->data; |
---|
533 | #endif |
---|
534 | |
---|
535 | /* Process Row-0 data 1*/ |
---|
536 | pred1D = P1[0]; |
---|
537 | diff = spaceFillingValue[1] - pred1D; |
---|
538 | |
---|
539 | itvNum = fabs(diff)/realPrecision + 1; |
---|
540 | |
---|
541 | if (itvNum < exe_params->intvCapacity) |
---|
542 | { |
---|
543 | if (diff < 0) itvNum = -itvNum; |
---|
544 | type[1] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
545 | P1[1] = pred1D + 2 * (type[1] - exe_params->intvRadius) * realPrecision; |
---|
546 | } |
---|
547 | else |
---|
548 | { |
---|
549 | type[1] = 0; |
---|
550 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
551 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
552 | memcpy(preDataBytes,vce->curBytes,8); |
---|
553 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
554 | P1[1] = vce->data; |
---|
555 | } |
---|
556 | #ifdef HAVE_TIMECMPR |
---|
557 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
558 | decData[1] = P1[1]; |
---|
559 | #endif |
---|
560 | |
---|
561 | /* Process Row-0 data 2 --> data r2-1 */ |
---|
562 | for (j = 2; j < r2; j++) |
---|
563 | { |
---|
564 | pred1D = 2*P1[j-1] - P1[j-2]; |
---|
565 | diff = spaceFillingValue[j] - pred1D; |
---|
566 | |
---|
567 | itvNum = fabs(diff)/realPrecision + 1; |
---|
568 | |
---|
569 | if (itvNum < exe_params->intvCapacity) |
---|
570 | { |
---|
571 | if (diff < 0) itvNum = -itvNum; |
---|
572 | type[j] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
573 | P1[j] = pred1D + 2 * (type[j] - exe_params->intvRadius) * realPrecision; |
---|
574 | } |
---|
575 | else |
---|
576 | { |
---|
577 | type[j] = 0; |
---|
578 | compressSingleDoubleValue(vce, spaceFillingValue[j], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
579 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
580 | memcpy(preDataBytes,vce->curBytes,8); |
---|
581 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
582 | P1[j] = vce->data; |
---|
583 | } |
---|
584 | #ifdef HAVE_TIMECMPR |
---|
585 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
586 | decData[j] = P1[j]; |
---|
587 | #endif |
---|
588 | } |
---|
589 | |
---|
590 | /* Process Row-1 --> Row-r1-1 */ |
---|
591 | size_t index; |
---|
592 | for (i = 1; i < r1; i++) |
---|
593 | { |
---|
594 | /* Process row-i data 0 */ |
---|
595 | index = i*r2; |
---|
596 | pred1D = P1[0]; |
---|
597 | diff = spaceFillingValue[index] - pred1D; |
---|
598 | |
---|
599 | itvNum = fabs(diff)/realPrecision + 1; |
---|
600 | |
---|
601 | if (itvNum < exe_params->intvCapacity) |
---|
602 | { |
---|
603 | if (diff < 0) itvNum = -itvNum; |
---|
604 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
605 | P0[0] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
606 | } |
---|
607 | else |
---|
608 | { |
---|
609 | type[index] = 0; |
---|
610 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
611 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
612 | memcpy(preDataBytes,vce->curBytes,8); |
---|
613 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
614 | P0[0] = vce->data; |
---|
615 | } |
---|
616 | #ifdef HAVE_TIMECMPR |
---|
617 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
618 | decData[index] = P0[0]; |
---|
619 | #endif |
---|
620 | |
---|
621 | /* Process row-i data 1 --> r2-1*/ |
---|
622 | for (j = 1; j < r2; j++) |
---|
623 | { |
---|
624 | index = i*r2+j; |
---|
625 | pred2D = P0[j-1] + P1[j] - P1[j-1]; |
---|
626 | |
---|
627 | diff = spaceFillingValue[index] - pred2D; |
---|
628 | |
---|
629 | itvNum = fabs(diff)/realPrecision + 1; |
---|
630 | |
---|
631 | if (itvNum < exe_params->intvCapacity) |
---|
632 | { |
---|
633 | if (diff < 0) itvNum = -itvNum; |
---|
634 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
635 | P0[j] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
636 | } |
---|
637 | else |
---|
638 | { |
---|
639 | type[index] = 0; |
---|
640 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
641 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
642 | memcpy(preDataBytes,vce->curBytes,8); |
---|
643 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
644 | P0[j] = vce->data; |
---|
645 | } |
---|
646 | #ifdef HAVE_TIMECMPR |
---|
647 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
648 | decData[index] = P0[j]; |
---|
649 | #endif |
---|
650 | } |
---|
651 | |
---|
652 | double *Pt; |
---|
653 | Pt = P1; |
---|
654 | P1 = P0; |
---|
655 | P0 = Pt; |
---|
656 | } |
---|
657 | |
---|
658 | if(r2!=1) |
---|
659 | free(P0); |
---|
660 | free(P1); |
---|
661 | size_t exactDataNum = exactLeadNumArray->size; |
---|
662 | |
---|
663 | TightDataPointStorageD* tdps; |
---|
664 | |
---|
665 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
666 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
667 | exactLeadNumArray->array, |
---|
668 | resiBitArray->array, resiBitArray->size, |
---|
669 | resiBitsLength, |
---|
670 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
671 | |
---|
672 | /* int sum =0; |
---|
673 | for(i=0;i<dataLength;i++) |
---|
674 | if(type[i]==0) sum++; |
---|
675 | printf("opt_quantizations=%d, exactDataNum=%d, sum=%d\n",quantization_intervals, exactDataNum, sum); |
---|
676 | |
---|
677 | for(i=0;i<dataLength;i++) |
---|
678 | printf("%d ", type[i]); |
---|
679 | printf("\n");*/ |
---|
680 | |
---|
681 | // printf("exactDataNum=%d, expSegmentsInBytes_size=%d, exactMidByteArray->size=%d\n", |
---|
682 | // exactDataNum, expSegmentsInBytes_size, exactMidByteArray->size); |
---|
683 | |
---|
684 | // for(i = 3800;i<3844;i++) |
---|
685 | // printf("exactLeadNumArray->array[%d]=%d\n",i,exactLeadNumArray->array[i]); |
---|
686 | |
---|
687 | //free memory |
---|
688 | free_DIA(exactLeadNumArray); |
---|
689 | free_DIA(resiBitArray); |
---|
690 | free(type); |
---|
691 | free(vce); |
---|
692 | free(lce); |
---|
693 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
694 | |
---|
695 | return tdps; |
---|
696 | } |
---|
697 | |
---|
698 | /** |
---|
699 | * |
---|
700 | * Note: @r1 is high dimension |
---|
701 | * @r2 is low dimension |
---|
702 | * */ |
---|
703 | char SZ_compress_args_double_NoCkRngeNoGzip_2D(unsigned char** newByteData, double *oriData, size_t r1, size_t r2, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d) |
---|
704 | { |
---|
705 | size_t dataLength = r1*r2; |
---|
706 | char compressionType = 0; |
---|
707 | TightDataPointStorageD* tdps = NULL; |
---|
708 | #ifdef HAVE_TIMECMPR |
---|
709 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
710 | { |
---|
711 | int timestep = sz_tsc->currentStep; |
---|
712 | if(timestep % confparams_cpr->snapshotCmprStep != 0) |
---|
713 | { |
---|
714 | tdps = SZ_compress_double_1D_MDQ_ts(oriData, dataLength, multisteps, realPrecision, valueRangeSize, medianValue_d); |
---|
715 | compressionType = 1; //time-series based compression |
---|
716 | } |
---|
717 | else |
---|
718 | { |
---|
719 | tdps = SZ_compress_double_2D_MDQ(oriData, r1, r2, realPrecision, valueRangeSize, medianValue_d); |
---|
720 | compressionType = 0; //snapshot-based compression |
---|
721 | multisteps->lastSnapshotStep = timestep; |
---|
722 | } |
---|
723 | } |
---|
724 | else |
---|
725 | #endif |
---|
726 | tdps = SZ_compress_double_2D_MDQ(oriData, r1, r2, realPrecision, valueRangeSize, medianValue_d); |
---|
727 | |
---|
728 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
729 | |
---|
730 | if(*outSize>dataLength*sizeof(double)) |
---|
731 | SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
732 | |
---|
733 | free_TightDataPointStorageD(tdps); |
---|
734 | return compressionType; |
---|
735 | } |
---|
736 | |
---|
737 | TightDataPointStorageD* SZ_compress_double_3D_MDQ(double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision, double valueRangeSize, double medianValue_d) |
---|
738 | { |
---|
739 | #ifdef HAVE_TIMECMPR |
---|
740 | double* decData = NULL; |
---|
741 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
742 | decData = (double*)(multisteps->hist_data); |
---|
743 | #endif |
---|
744 | |
---|
745 | unsigned int quantization_intervals; |
---|
746 | if(exe_params->optQuantMode==1) |
---|
747 | { |
---|
748 | quantization_intervals = optimize_intervals_double_3D_opt(oriData, r1, r2, r3, realPrecision); |
---|
749 | updateQuantizationInfo(quantization_intervals); |
---|
750 | } |
---|
751 | else |
---|
752 | quantization_intervals = exe_params->intvCapacity; |
---|
753 | size_t i,j,k; |
---|
754 | int reqLength; |
---|
755 | double pred1D, pred2D, pred3D; |
---|
756 | double diff = 0.0; |
---|
757 | double itvNum = 0; |
---|
758 | double *P0, *P1; |
---|
759 | |
---|
760 | size_t dataLength = r1*r2*r3; |
---|
761 | |
---|
762 | size_t r23 = r2*r3; |
---|
763 | |
---|
764 | P0 = (double*)malloc(r23*sizeof(double)); |
---|
765 | P1 = (double*)malloc(r23*sizeof(double)); |
---|
766 | |
---|
767 | double medianValue = medianValue_d; |
---|
768 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
769 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
770 | |
---|
771 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
772 | //type[dataLength]=0; |
---|
773 | |
---|
774 | double* spaceFillingValue = oriData; // |
---|
775 | |
---|
776 | DynamicIntArray *exactLeadNumArray; |
---|
777 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
778 | |
---|
779 | DynamicByteArray *exactMidByteArray; |
---|
780 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
781 | |
---|
782 | DynamicIntArray *resiBitArray; |
---|
783 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
784 | |
---|
785 | type[0] = 0; |
---|
786 | |
---|
787 | unsigned char preDataBytes[8]; |
---|
788 | longToBytes_bigEndian(preDataBytes, 0); |
---|
789 | |
---|
790 | int reqBytesLength = reqLength/8; |
---|
791 | int resiBitsLength = reqLength%8; |
---|
792 | |
---|
793 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
794 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
795 | |
---|
796 | |
---|
797 | /////////////////////////// Process layer-0 /////////////////////////// |
---|
798 | /* Process Row-0 data 0*/ |
---|
799 | type[0] = 0; |
---|
800 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
801 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
802 | memcpy(preDataBytes,vce->curBytes,8); |
---|
803 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
804 | P1[0] = vce->data; |
---|
805 | #ifdef HAVE_TIMECMPR |
---|
806 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
807 | decData[0] = P1[0]; |
---|
808 | #endif |
---|
809 | |
---|
810 | /* Process Row-0 data 1*/ |
---|
811 | pred1D = P1[0]; |
---|
812 | diff = spaceFillingValue[1] - pred1D; |
---|
813 | |
---|
814 | itvNum = fabs(diff)/realPrecision + 1; |
---|
815 | |
---|
816 | if (itvNum < exe_params->intvCapacity) |
---|
817 | { |
---|
818 | if (diff < 0) itvNum = -itvNum; |
---|
819 | type[1] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
820 | P1[1] = pred1D + 2 * (type[1] - exe_params->intvRadius) * realPrecision; |
---|
821 | } |
---|
822 | else |
---|
823 | { |
---|
824 | type[1] = 0; |
---|
825 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
826 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
827 | memcpy(preDataBytes,vce->curBytes,8); |
---|
828 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
829 | P1[1] = vce->data; |
---|
830 | } |
---|
831 | #ifdef HAVE_TIMECMPR |
---|
832 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
833 | decData[1] = P1[1]; |
---|
834 | #endif |
---|
835 | |
---|
836 | /* Process Row-0 data 2 --> data r3-1 */ |
---|
837 | for (j = 2; j < r3; j++) |
---|
838 | { |
---|
839 | pred1D = 2*P1[j-1] - P1[j-2]; |
---|
840 | diff = spaceFillingValue[j] - pred1D; |
---|
841 | |
---|
842 | itvNum = fabs(diff)/realPrecision + 1; |
---|
843 | |
---|
844 | if (itvNum < exe_params->intvCapacity) |
---|
845 | { |
---|
846 | if (diff < 0) itvNum = -itvNum; |
---|
847 | type[j] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
848 | P1[j] = pred1D + 2 * (type[j] - exe_params->intvRadius) * realPrecision; |
---|
849 | } |
---|
850 | else |
---|
851 | { |
---|
852 | type[j] = 0; |
---|
853 | compressSingleDoubleValue(vce, spaceFillingValue[j], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
854 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
855 | memcpy(preDataBytes,vce->curBytes,8); |
---|
856 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
857 | P1[j] = vce->data; |
---|
858 | } |
---|
859 | #ifdef HAVE_TIMECMPR |
---|
860 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
861 | decData[j] = P1[j]; |
---|
862 | #endif |
---|
863 | } |
---|
864 | |
---|
865 | /* Process Row-1 --> Row-r2-1 */ |
---|
866 | size_t index; |
---|
867 | for (i = 1; i < r2; i++) |
---|
868 | { |
---|
869 | /* Process row-i data 0 */ |
---|
870 | index = i*r3; |
---|
871 | pred1D = P1[index-r3]; |
---|
872 | diff = spaceFillingValue[index] - pred1D; |
---|
873 | |
---|
874 | itvNum = fabs(diff)/realPrecision + 1; |
---|
875 | |
---|
876 | if (itvNum < exe_params->intvCapacity) |
---|
877 | { |
---|
878 | if (diff < 0) itvNum = -itvNum; |
---|
879 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
880 | P1[index] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
881 | } |
---|
882 | else |
---|
883 | { |
---|
884 | type[index] = 0; |
---|
885 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
886 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
887 | memcpy(preDataBytes,vce->curBytes,8); |
---|
888 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
889 | P1[index] = vce->data; |
---|
890 | } |
---|
891 | #ifdef HAVE_TIMECMPR |
---|
892 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
893 | decData[index] = P1[index]; |
---|
894 | #endif |
---|
895 | |
---|
896 | /* Process row-i data 1 --> data r3-1*/ |
---|
897 | for (j = 1; j < r3; j++) |
---|
898 | { |
---|
899 | index = i*r3+j; |
---|
900 | pred2D = P1[index-1] + P1[index-r3] - P1[index-r3-1]; |
---|
901 | |
---|
902 | diff = spaceFillingValue[index] - pred2D; |
---|
903 | |
---|
904 | itvNum = fabs(diff)/realPrecision + 1; |
---|
905 | |
---|
906 | if (itvNum < exe_params->intvCapacity) |
---|
907 | { |
---|
908 | if (diff < 0) itvNum = -itvNum; |
---|
909 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
910 | P1[index] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
911 | } |
---|
912 | else |
---|
913 | { |
---|
914 | type[index] = 0; |
---|
915 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
916 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
917 | memcpy(preDataBytes,vce->curBytes,8); |
---|
918 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
919 | P1[index] = vce->data; |
---|
920 | } |
---|
921 | #ifdef HAVE_TIMECMPR |
---|
922 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
923 | decData[index] = P1[index]; |
---|
924 | #endif |
---|
925 | } |
---|
926 | } |
---|
927 | |
---|
928 | |
---|
929 | /////////////////////////// Process layer-1 --> layer-r1-1 /////////////////////////// |
---|
930 | |
---|
931 | for (k = 1; k < r1; k++) |
---|
932 | { |
---|
933 | /* Process Row-0 data 0*/ |
---|
934 | index = k*r23; |
---|
935 | pred1D = P1[0]; |
---|
936 | diff = spaceFillingValue[index] - pred1D; |
---|
937 | |
---|
938 | itvNum = fabs(diff)/realPrecision + 1; |
---|
939 | |
---|
940 | if (itvNum < exe_params->intvCapacity) |
---|
941 | { |
---|
942 | if (diff < 0) itvNum = -itvNum; |
---|
943 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
944 | P0[0] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
945 | } |
---|
946 | else |
---|
947 | { |
---|
948 | type[index] = 0; |
---|
949 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
950 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
951 | memcpy(preDataBytes,vce->curBytes,8); |
---|
952 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
953 | P0[0] = vce->data; |
---|
954 | } |
---|
955 | #ifdef HAVE_TIMECMPR |
---|
956 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
957 | decData[index] = P0[0]; |
---|
958 | #endif |
---|
959 | |
---|
960 | /* Process Row-0 data 1 --> data r3-1 */ |
---|
961 | for (j = 1; j < r3; j++) |
---|
962 | { |
---|
963 | //index = k*r2*r3+j; |
---|
964 | index ++; |
---|
965 | pred2D = P0[j-1] + P1[j] - P1[j-1]; |
---|
966 | diff = spaceFillingValue[index] - pred2D; |
---|
967 | |
---|
968 | itvNum = fabs(diff)/realPrecision + 1; |
---|
969 | |
---|
970 | if (itvNum < exe_params->intvCapacity) |
---|
971 | { |
---|
972 | if (diff < 0) itvNum = -itvNum; |
---|
973 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
974 | P0[j] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
975 | } |
---|
976 | else |
---|
977 | { |
---|
978 | type[index] = 0; |
---|
979 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
980 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
981 | memcpy(preDataBytes,vce->curBytes,8); |
---|
982 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
983 | P0[j] = vce->data; |
---|
984 | } |
---|
985 | #ifdef HAVE_TIMECMPR |
---|
986 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
987 | decData[index] = P0[j]; |
---|
988 | #endif |
---|
989 | } |
---|
990 | |
---|
991 | /* Process Row-1 --> Row-r2-1 */ |
---|
992 | size_t index2D; |
---|
993 | for (i = 1; i < r2; i++) |
---|
994 | { |
---|
995 | /* Process Row-i data 0 */ |
---|
996 | index = k*r23 + i*r3; |
---|
997 | index2D = i*r3; |
---|
998 | pred2D = P0[index2D-r3] + P1[index2D] - P1[index2D-r3]; |
---|
999 | diff = spaceFillingValue[index] - pred2D; |
---|
1000 | |
---|
1001 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1002 | |
---|
1003 | if (itvNum < exe_params->intvCapacity) |
---|
1004 | { |
---|
1005 | if (diff < 0) itvNum = -itvNum; |
---|
1006 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1007 | P0[index2D] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1008 | } |
---|
1009 | else |
---|
1010 | { |
---|
1011 | type[index] = 0; |
---|
1012 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1013 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1014 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1015 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1016 | P0[index2D] = vce->data; |
---|
1017 | } |
---|
1018 | #ifdef HAVE_TIMECMPR |
---|
1019 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1020 | decData[index] = P0[index2D]; |
---|
1021 | #endif |
---|
1022 | |
---|
1023 | /* Process Row-i data 1 --> data r3-1 */ |
---|
1024 | for (j = 1; j < r3; j++) |
---|
1025 | { |
---|
1026 | //index = k*r2*r3 + i*r3 + j; |
---|
1027 | index ++; |
---|
1028 | index2D = i*r3 + j; |
---|
1029 | pred3D = P0[index2D-1] + P0[index2D-r3]+ P1[index2D] - P0[index2D-r3-1] - P1[index2D-r3] - P1[index2D-1] + P1[index2D-r3-1]; |
---|
1030 | diff = spaceFillingValue[index] - pred3D; |
---|
1031 | |
---|
1032 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1033 | |
---|
1034 | if (itvNum < exe_params->intvCapacity) |
---|
1035 | { |
---|
1036 | if (diff < 0) itvNum = -itvNum; |
---|
1037 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1038 | P0[index2D] = pred3D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1039 | } |
---|
1040 | else |
---|
1041 | { |
---|
1042 | type[index] = 0; |
---|
1043 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1044 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1045 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1046 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1047 | P0[index2D] = vce->data; |
---|
1048 | } |
---|
1049 | #ifdef HAVE_TIMECMPR |
---|
1050 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1051 | decData[index] = P0[index2D]; |
---|
1052 | #endif |
---|
1053 | } |
---|
1054 | } |
---|
1055 | |
---|
1056 | double *Pt; |
---|
1057 | Pt = P1; |
---|
1058 | P1 = P0; |
---|
1059 | P0 = Pt; |
---|
1060 | } |
---|
1061 | if(r23!=1) |
---|
1062 | free(P0); |
---|
1063 | free(P1); |
---|
1064 | size_t exactDataNum = exactLeadNumArray->size; |
---|
1065 | |
---|
1066 | TightDataPointStorageD* tdps; |
---|
1067 | |
---|
1068 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
1069 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
1070 | exactLeadNumArray->array, |
---|
1071 | resiBitArray->array, resiBitArray->size, |
---|
1072 | resiBitsLength, |
---|
1073 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
1074 | |
---|
1075 | // printf("exactDataNum=%d, expSegmentsInBytes_size=%d, exactMidByteArray->size=%d\n", |
---|
1076 | // exactDataNum, expSegmentsInBytes_size, exactMidByteArray->size); |
---|
1077 | |
---|
1078 | // for(i = 3800;i<3844;i++) |
---|
1079 | // printf("exactLeadNumArray->array[%d]=%d\n",i,exactLeadNumArray->array[i]); |
---|
1080 | |
---|
1081 | //free memory |
---|
1082 | free_DIA(exactLeadNumArray); |
---|
1083 | free_DIA(resiBitArray); |
---|
1084 | free(type); |
---|
1085 | free(vce); |
---|
1086 | free(lce); |
---|
1087 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
1088 | |
---|
1089 | return tdps; |
---|
1090 | } |
---|
1091 | |
---|
1092 | |
---|
1093 | char SZ_compress_args_double_NoCkRngeNoGzip_3D(unsigned char** newByteData, double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d) |
---|
1094 | { |
---|
1095 | size_t dataLength = r1*r2*r3; |
---|
1096 | char compressionType = 0; |
---|
1097 | TightDataPointStorageD* tdps = NULL; |
---|
1098 | #ifdef HAVE_TIMECMPR |
---|
1099 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1100 | { |
---|
1101 | int timestep = sz_tsc->currentStep; |
---|
1102 | if(timestep % confparams_cpr->snapshotCmprStep != 0) |
---|
1103 | { |
---|
1104 | tdps = SZ_compress_double_1D_MDQ_ts(oriData, dataLength, multisteps, realPrecision, valueRangeSize, medianValue_d); |
---|
1105 | compressionType = 1; //time-series based compression |
---|
1106 | } |
---|
1107 | else |
---|
1108 | { |
---|
1109 | tdps = SZ_compress_double_3D_MDQ(oriData, r1, r2, r3, realPrecision, valueRangeSize, medianValue_d); |
---|
1110 | compressionType = 0; //snapshot-based compression |
---|
1111 | multisteps->lastSnapshotStep = timestep; |
---|
1112 | } |
---|
1113 | } |
---|
1114 | else |
---|
1115 | #endif |
---|
1116 | tdps = SZ_compress_double_3D_MDQ(oriData, r1, r2, r3, realPrecision, valueRangeSize, medianValue_d); |
---|
1117 | |
---|
1118 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
1119 | |
---|
1120 | if(*outSize>dataLength*sizeof(double)) |
---|
1121 | SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1122 | |
---|
1123 | free_TightDataPointStorageD(tdps); |
---|
1124 | return compressionType; |
---|
1125 | } |
---|
1126 | |
---|
1127 | TightDataPointStorageD* SZ_compress_double_4D_MDQ(double *oriData, size_t r1, size_t r2, size_t r3, size_t r4, double realPrecision, double valueRangeSize, double medianValue_d) |
---|
1128 | { |
---|
1129 | unsigned int quantization_intervals; |
---|
1130 | if(exe_params->optQuantMode==1) |
---|
1131 | { |
---|
1132 | quantization_intervals = optimize_intervals_double_4D(oriData, r1, r2, r3, r4, realPrecision); |
---|
1133 | updateQuantizationInfo(quantization_intervals); |
---|
1134 | } |
---|
1135 | else |
---|
1136 | quantization_intervals = exe_params->intvCapacity; |
---|
1137 | |
---|
1138 | size_t i,j,k; |
---|
1139 | int reqLength; |
---|
1140 | double pred1D, pred2D, pred3D; |
---|
1141 | double diff = 0.0; |
---|
1142 | double itvNum = 0; |
---|
1143 | double *P0, *P1; |
---|
1144 | |
---|
1145 | size_t dataLength = r1*r2*r3*r4; |
---|
1146 | |
---|
1147 | size_t r234 = r2*r3*r4; |
---|
1148 | size_t r34 = r3*r4; |
---|
1149 | |
---|
1150 | P0 = (double*)malloc(r34*sizeof(double)); |
---|
1151 | P1 = (double*)malloc(r34*sizeof(double)); |
---|
1152 | |
---|
1153 | double medianValue = medianValue_d; |
---|
1154 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
1155 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
1156 | |
---|
1157 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
1158 | |
---|
1159 | double* spaceFillingValue = oriData; // |
---|
1160 | |
---|
1161 | DynamicIntArray *exactLeadNumArray; |
---|
1162 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
1163 | |
---|
1164 | DynamicByteArray *exactMidByteArray; |
---|
1165 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
1166 | |
---|
1167 | DynamicIntArray *resiBitArray; |
---|
1168 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
1169 | |
---|
1170 | unsigned char preDataBytes[8]; |
---|
1171 | longToBytes_bigEndian(preDataBytes, 0); |
---|
1172 | |
---|
1173 | int reqBytesLength = reqLength/8; |
---|
1174 | int resiBitsLength = reqLength%8; |
---|
1175 | |
---|
1176 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
1177 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
1178 | |
---|
1179 | |
---|
1180 | size_t l; |
---|
1181 | for (l = 0; l < r1; l++) |
---|
1182 | { |
---|
1183 | |
---|
1184 | /////////////////////////// Process layer-0 /////////////////////////// |
---|
1185 | /* Process Row-0 data 0*/ |
---|
1186 | size_t index = l*r234; |
---|
1187 | size_t index2D = 0; |
---|
1188 | |
---|
1189 | type[index] = 0; |
---|
1190 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1191 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1192 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1193 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1194 | P1[index2D] = vce->data; |
---|
1195 | |
---|
1196 | /* Process Row-0 data 1*/ |
---|
1197 | index = l*r234+1; |
---|
1198 | index2D = 1; |
---|
1199 | |
---|
1200 | pred1D = P1[index2D-1]; |
---|
1201 | diff = spaceFillingValue[index] - pred1D; |
---|
1202 | |
---|
1203 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1204 | |
---|
1205 | if (itvNum < exe_params->intvCapacity) |
---|
1206 | { |
---|
1207 | if (diff < 0) itvNum = -itvNum; |
---|
1208 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1209 | P1[index2D] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1210 | } |
---|
1211 | else |
---|
1212 | { |
---|
1213 | type[index] = 0; |
---|
1214 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1215 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1216 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1217 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1218 | P1[index2D] = vce->data; |
---|
1219 | } |
---|
1220 | |
---|
1221 | /* Process Row-0 data 2 --> data r4-1 */ |
---|
1222 | for (j = 2; j < r4; j++) |
---|
1223 | { |
---|
1224 | index = l*r234+j; |
---|
1225 | index2D = j; |
---|
1226 | |
---|
1227 | pred1D = 2*P1[index2D-1] - P1[index2D-2]; |
---|
1228 | diff = spaceFillingValue[index] - pred1D; |
---|
1229 | |
---|
1230 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1231 | |
---|
1232 | if (itvNum < exe_params->intvCapacity) |
---|
1233 | { |
---|
1234 | if (diff < 0) itvNum = -itvNum; |
---|
1235 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1236 | P1[index2D] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1237 | } |
---|
1238 | else |
---|
1239 | { |
---|
1240 | type[index] = 0; |
---|
1241 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1242 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1243 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1244 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1245 | P1[index2D] = vce->data; |
---|
1246 | } |
---|
1247 | } |
---|
1248 | |
---|
1249 | /* Process Row-1 --> Row-r3-1 */ |
---|
1250 | for (i = 1; i < r3; i++) |
---|
1251 | { |
---|
1252 | /* Process row-i data 0 */ |
---|
1253 | index = l*r234+i*r4; |
---|
1254 | index2D = i*r4; |
---|
1255 | |
---|
1256 | pred1D = P1[index2D-r4]; |
---|
1257 | diff = spaceFillingValue[index] - pred1D; |
---|
1258 | |
---|
1259 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1260 | |
---|
1261 | if (itvNum < exe_params->intvCapacity) |
---|
1262 | { |
---|
1263 | if (diff < 0) itvNum = -itvNum; |
---|
1264 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1265 | P1[index2D] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1266 | } |
---|
1267 | else |
---|
1268 | { |
---|
1269 | type[index] = 0; |
---|
1270 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1271 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1272 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1273 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1274 | P1[index2D] = vce->data; |
---|
1275 | } |
---|
1276 | |
---|
1277 | /* Process row-i data 1 --> data r4-1*/ |
---|
1278 | for (j = 1; j < r4; j++) |
---|
1279 | { |
---|
1280 | index = l*r234+i*r4+j; |
---|
1281 | index2D = i*r4+j; |
---|
1282 | |
---|
1283 | pred2D = P1[index2D-1] + P1[index2D-r4] - P1[index2D-r4-1]; |
---|
1284 | |
---|
1285 | diff = spaceFillingValue[index] - pred2D; |
---|
1286 | |
---|
1287 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1288 | |
---|
1289 | if (itvNum < exe_params->intvCapacity) |
---|
1290 | { |
---|
1291 | if (diff < 0) itvNum = -itvNum; |
---|
1292 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1293 | P1[index2D] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1294 | } |
---|
1295 | else |
---|
1296 | { |
---|
1297 | type[index] = 0; |
---|
1298 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1299 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1300 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1301 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1302 | P1[index2D] = vce->data; |
---|
1303 | } |
---|
1304 | } |
---|
1305 | } |
---|
1306 | |
---|
1307 | |
---|
1308 | /////////////////////////// Process layer-1 --> layer-r2-1 /////////////////////////// |
---|
1309 | |
---|
1310 | for (k = 1; k < r2; k++) |
---|
1311 | { |
---|
1312 | /* Process Row-0 data 0*/ |
---|
1313 | index = l*r234+k*r34; |
---|
1314 | index2D = 0; |
---|
1315 | |
---|
1316 | pred1D = P1[index2D]; |
---|
1317 | diff = spaceFillingValue[index] - pred1D; |
---|
1318 | |
---|
1319 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1320 | |
---|
1321 | if (itvNum < exe_params->intvCapacity) |
---|
1322 | { |
---|
1323 | if (diff < 0) itvNum = -itvNum; |
---|
1324 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1325 | P0[index2D] = pred1D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1326 | } |
---|
1327 | else |
---|
1328 | { |
---|
1329 | type[index] = 0; |
---|
1330 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1331 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1332 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1333 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1334 | P0[index2D] = vce->data; |
---|
1335 | } |
---|
1336 | |
---|
1337 | |
---|
1338 | /* Process Row-0 data 1 --> data r4-1 */ |
---|
1339 | for (j = 1; j < r4; j++) |
---|
1340 | { |
---|
1341 | index = l*r234+k*r34+j; |
---|
1342 | index2D = j; |
---|
1343 | |
---|
1344 | pred2D = P0[index2D-1] + P1[index2D] - P1[index2D-1]; |
---|
1345 | diff = spaceFillingValue[index] - pred2D; |
---|
1346 | |
---|
1347 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1348 | |
---|
1349 | if (itvNum < exe_params->intvCapacity) |
---|
1350 | { |
---|
1351 | if (diff < 0) itvNum = -itvNum; |
---|
1352 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1353 | P0[index2D] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1354 | } |
---|
1355 | else |
---|
1356 | { |
---|
1357 | type[index] = 0; |
---|
1358 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1359 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1360 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1361 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1362 | P0[index2D] = vce->data; |
---|
1363 | } |
---|
1364 | } |
---|
1365 | |
---|
1366 | /* Process Row-1 --> Row-r3-1 */ |
---|
1367 | for (i = 1; i < r3; i++) |
---|
1368 | { |
---|
1369 | /* Process Row-i data 0 */ |
---|
1370 | index = l*r234+k*r34+i*r4; |
---|
1371 | index2D = i*r4; |
---|
1372 | |
---|
1373 | pred2D = P0[index2D-r4] + P1[index2D] - P1[index2D-r4]; |
---|
1374 | diff = spaceFillingValue[index] - pred2D; |
---|
1375 | |
---|
1376 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1377 | |
---|
1378 | if (itvNum < exe_params->intvCapacity) |
---|
1379 | { |
---|
1380 | if (diff < 0) itvNum = -itvNum; |
---|
1381 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1382 | P0[index2D] = pred2D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1383 | } |
---|
1384 | else |
---|
1385 | { |
---|
1386 | type[index] = 0; |
---|
1387 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1388 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1389 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1390 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1391 | P0[index2D] = vce->data; |
---|
1392 | } |
---|
1393 | |
---|
1394 | /* Process Row-i data 1 --> data r4-1 */ |
---|
1395 | for (j = 1; j < r4; j++) |
---|
1396 | { |
---|
1397 | index = l*r234+k*r34+i*r4+j; |
---|
1398 | index2D = i*r4+j; |
---|
1399 | |
---|
1400 | pred3D = P0[index2D-1] + P0[index2D-r4]+ P1[index2D] - P0[index2D-r4-1] - P1[index2D-r4] - P1[index2D-1] + P1[index2D-r4-1]; |
---|
1401 | diff = spaceFillingValue[index] - pred3D; |
---|
1402 | |
---|
1403 | |
---|
1404 | itvNum = fabs(diff)/realPrecision + 1; |
---|
1405 | |
---|
1406 | if (itvNum < exe_params->intvCapacity) |
---|
1407 | { |
---|
1408 | if (diff < 0) itvNum = -itvNum; |
---|
1409 | type[index] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
1410 | P0[index2D] = pred3D + 2 * (type[index] - exe_params->intvRadius) * realPrecision; |
---|
1411 | } |
---|
1412 | else |
---|
1413 | { |
---|
1414 | type[index] = 0; |
---|
1415 | compressSingleDoubleValue(vce, spaceFillingValue[index], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
1416 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
1417 | memcpy(preDataBytes,vce->curBytes,8); |
---|
1418 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
1419 | P0[index2D] = vce->data; |
---|
1420 | } |
---|
1421 | } |
---|
1422 | } |
---|
1423 | |
---|
1424 | double *Pt; |
---|
1425 | Pt = P1; |
---|
1426 | P1 = P0; |
---|
1427 | P0 = Pt; |
---|
1428 | } |
---|
1429 | } |
---|
1430 | |
---|
1431 | free(P0); |
---|
1432 | free(P1); |
---|
1433 | size_t exactDataNum = exactLeadNumArray->size; |
---|
1434 | |
---|
1435 | TightDataPointStorageD* tdps; |
---|
1436 | |
---|
1437 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
1438 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
1439 | exactLeadNumArray->array, |
---|
1440 | resiBitArray->array, resiBitArray->size, |
---|
1441 | resiBitsLength, |
---|
1442 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
1443 | |
---|
1444 | //free memory |
---|
1445 | free_DIA(exactLeadNumArray); |
---|
1446 | free_DIA(resiBitArray); |
---|
1447 | free(type); |
---|
1448 | free(vce); |
---|
1449 | free(lce); |
---|
1450 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
1451 | |
---|
1452 | return tdps; |
---|
1453 | } |
---|
1454 | |
---|
1455 | |
---|
1456 | char SZ_compress_args_double_NoCkRngeNoGzip_4D(unsigned char** newByteData, double *oriData, size_t r1, size_t r2, size_t r3, size_t r4, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d) |
---|
1457 | { |
---|
1458 | TightDataPointStorageD* tdps = SZ_compress_double_4D_MDQ(oriData, r1, r2, r3, r4, realPrecision, valueRangeSize, medianValue_d); |
---|
1459 | |
---|
1460 | convertTDPStoFlatBytes_double(tdps, newByteData, outSize); |
---|
1461 | |
---|
1462 | size_t dataLength = r1*r2*r3*r4; |
---|
1463 | if(*outSize>dataLength*sizeof(double)) |
---|
1464 | SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1465 | |
---|
1466 | free_TightDataPointStorageD(tdps); |
---|
1467 | return 0; |
---|
1468 | } |
---|
1469 | |
---|
1470 | void SZ_compress_args_double_withinRange(unsigned char** newByteData, double *oriData, size_t dataLength, size_t *outSize) |
---|
1471 | { |
---|
1472 | TightDataPointStorageD* tdps = (TightDataPointStorageD*) malloc(sizeof(TightDataPointStorageD)); |
---|
1473 | tdps->rtypeArray = NULL; |
---|
1474 | tdps->typeArray = NULL; |
---|
1475 | tdps->leadNumArray = NULL; |
---|
1476 | tdps->residualMidBits = NULL; |
---|
1477 | |
---|
1478 | tdps->allSameData = 1; |
---|
1479 | tdps->dataSeriesLength = dataLength; |
---|
1480 | tdps->exactMidBytes = (unsigned char*)malloc(sizeof(unsigned char)*8); |
---|
1481 | tdps->pwrErrBoundBytes = NULL; |
---|
1482 | tdps->isLossless = 0; |
---|
1483 | double value = oriData[0]; |
---|
1484 | doubleToBytes(tdps->exactMidBytes, value); |
---|
1485 | tdps->exactMidBytes_size = 8; |
---|
1486 | |
---|
1487 | size_t tmpOutSize; |
---|
1488 | //unsigned char *tmpByteData; |
---|
1489 | convertTDPStoFlatBytes_double(tdps, newByteData, &tmpOutSize); |
---|
1490 | //convertTDPStoFlatBytes_double(tdps, &tmpByteData, &tmpOutSize); |
---|
1491 | |
---|
1492 | //*newByteData = (unsigned char*)malloc(sizeof(unsigned char)*16); //for floating-point data (1+3+4+4) |
---|
1493 | //memcpy(*newByteData, tmpByteData, 16); |
---|
1494 | *outSize = tmpOutSize;//12==3+1+8(double_size)+MetaDataByteLength |
---|
1495 | free_TightDataPointStorageD(tdps); |
---|
1496 | } |
---|
1497 | |
---|
1498 | int SZ_compress_args_double_wRngeNoGzip(unsigned char** newByteData, double *oriData, |
---|
1499 | size_t r5, size_t r4, size_t r3, size_t r2, size_t r1, size_t *outSize, |
---|
1500 | int errBoundMode, double absErr_Bound, double relBoundRatio, double pwrErrRatio) |
---|
1501 | { |
---|
1502 | int status = SZ_SCES; |
---|
1503 | size_t dataLength = computeDataLength(r5,r4,r3,r2,r1); |
---|
1504 | double valueRangeSize = 0, medianValue = 0; |
---|
1505 | |
---|
1506 | double min = computeRangeSize_double(oriData, dataLength, &valueRangeSize, &medianValue); |
---|
1507 | double max = min+valueRangeSize; |
---|
1508 | double realPrecision = getRealPrecision_double(valueRangeSize, errBoundMode, absErr_Bound, relBoundRatio, &status); |
---|
1509 | |
---|
1510 | if(valueRangeSize <= realPrecision) |
---|
1511 | { |
---|
1512 | SZ_compress_args_double_withinRange(newByteData, oriData, dataLength, outSize); |
---|
1513 | } |
---|
1514 | else |
---|
1515 | { |
---|
1516 | if(r5==0&&r4==0&&r3==0&&r2==0) |
---|
1517 | { |
---|
1518 | if(errBoundMode>=PW_REL) |
---|
1519 | { |
---|
1520 | SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr(newByteData, oriData, pwrErrRatio, r1, outSize, min, max); |
---|
1521 | //SZ_compress_args_double_NoCkRngeNoGzip_1D_pwrgroup(newByteData, oriData, r1, absErr_Bound, relBoundRatio, pwrErrRatio, valueRangeSize, medianValue, outSize); |
---|
1522 | } |
---|
1523 | else |
---|
1524 | SZ_compress_args_double_NoCkRngeNoGzip_1D(newByteData, oriData, r1, realPrecision, outSize, valueRangeSize, medianValue); |
---|
1525 | } |
---|
1526 | else if(r5==0&&r4==0&&r3==0) |
---|
1527 | { |
---|
1528 | if(errBoundMode>=PW_REL) |
---|
1529 | SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr(newByteData, oriData, realPrecision, r2, r1, outSize, min, max); |
---|
1530 | else |
---|
1531 | SZ_compress_args_double_NoCkRngeNoGzip_2D(newByteData, oriData, r2, r1, realPrecision, outSize, valueRangeSize, medianValue); |
---|
1532 | } |
---|
1533 | else if(r5==0&&r4==0) |
---|
1534 | { |
---|
1535 | if(errBoundMode>=PW_REL) |
---|
1536 | SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr(newByteData, oriData, realPrecision, r3, r2, r1, outSize, min, max); |
---|
1537 | else |
---|
1538 | SZ_compress_args_double_NoCkRngeNoGzip_3D(newByteData, oriData, r3, r2, r1, realPrecision, outSize, valueRangeSize, medianValue); |
---|
1539 | } |
---|
1540 | else if(r5==0) |
---|
1541 | { |
---|
1542 | if(errBoundMode>=PW_REL) |
---|
1543 | SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr(newByteData, oriData, realPrecision, r4*r3, r2, r1, outSize, min, max); |
---|
1544 | else |
---|
1545 | SZ_compress_args_double_NoCkRngeNoGzip_3D(newByteData, oriData, r4*r3, r2, r1, realPrecision, outSize, valueRangeSize, medianValue); |
---|
1546 | } |
---|
1547 | } |
---|
1548 | return status; |
---|
1549 | } |
---|
1550 | |
---|
1551 | int SZ_compress_args_double(unsigned char** newByteData, double *oriData, |
---|
1552 | size_t r5, size_t r4, size_t r3, size_t r2, size_t r1, size_t *outSize, |
---|
1553 | int errBoundMode, double absErr_Bound, double relBoundRatio, double pwRelBoundRatio) |
---|
1554 | { |
---|
1555 | confparams_cpr->errorBoundMode = errBoundMode; |
---|
1556 | if(errBoundMode==PW_REL) |
---|
1557 | { |
---|
1558 | confparams_cpr->pw_relBoundRatio = pwRelBoundRatio; |
---|
1559 | //confparams_cpr->pwr_type = SZ_PWR_MIN_TYPE; |
---|
1560 | if(confparams_cpr->pwr_type==SZ_PWR_AVG_TYPE && r3 != 0 ) |
---|
1561 | { |
---|
1562 | printf("Error: Current version doesn't support 3D data compression with point-wise relative error bound being based on pwrType=AVG\n"); |
---|
1563 | exit(0); |
---|
1564 | return SZ_NSCS; |
---|
1565 | } |
---|
1566 | } |
---|
1567 | |
---|
1568 | int status = SZ_SCES; |
---|
1569 | size_t dataLength = computeDataLength(r5,r4,r3,r2,r1); |
---|
1570 | |
---|
1571 | if(dataLength <= MIN_NUM_OF_ELEMENTS) |
---|
1572 | { |
---|
1573 | *newByteData = SZ_skip_compress_double(oriData, dataLength, outSize); |
---|
1574 | return status; |
---|
1575 | } |
---|
1576 | |
---|
1577 | double valueRangeSize = 0, medianValue = 0; |
---|
1578 | |
---|
1579 | double min = computeRangeSize_double(oriData, dataLength, &valueRangeSize, &medianValue); |
---|
1580 | double max = min+valueRangeSize; |
---|
1581 | |
---|
1582 | double realPrecision = 0; |
---|
1583 | |
---|
1584 | if(confparams_cpr->errorBoundMode==PSNR) |
---|
1585 | { |
---|
1586 | confparams_cpr->errorBoundMode = ABS; |
---|
1587 | realPrecision = confparams_cpr->absErrBound = computeABSErrBoundFromPSNR(confparams_cpr->psnr, (double)confparams_cpr->predThreshold, valueRangeSize); |
---|
1588 | } |
---|
1589 | else |
---|
1590 | realPrecision = getRealPrecision_double(valueRangeSize, errBoundMode, absErr_Bound, relBoundRatio, &status); |
---|
1591 | |
---|
1592 | if(valueRangeSize <= realPrecision) |
---|
1593 | { |
---|
1594 | SZ_compress_args_double_withinRange(newByteData, oriData, dataLength, outSize); |
---|
1595 | } |
---|
1596 | else |
---|
1597 | { |
---|
1598 | size_t tmpOutSize = 0; |
---|
1599 | unsigned char* tmpByteData; |
---|
1600 | if (r2==0) |
---|
1601 | { |
---|
1602 | if(confparams_cpr->errorBoundMode>=PW_REL) |
---|
1603 | { |
---|
1604 | SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr_pre_log(&tmpByteData, oriData, pwRelBoundRatio, r1, &tmpOutSize, min, max); |
---|
1605 | //SZ_compress_args_double_NoCkRngeNoGzip_1D_pwrgroup(&tmpByteData, oriData, r1, absErr_Bound, relBoundRatio, pwRelBoundRatio, valueRangeSize, medianValue, &tmpOutSize); |
---|
1606 | } |
---|
1607 | else |
---|
1608 | #ifdef HAVE_TIMECMPR |
---|
1609 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1610 | multisteps->compressionType = SZ_compress_args_double_NoCkRngeNoGzip_1D(&tmpByteData, oriData, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1611 | else |
---|
1612 | #endif |
---|
1613 | SZ_compress_args_double_NoCkRngeNoGzip_1D(&tmpByteData, oriData, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1614 | } |
---|
1615 | else |
---|
1616 | if (r3==0) |
---|
1617 | { |
---|
1618 | if(confparams_cpr->errorBoundMode>=PW_REL) |
---|
1619 | SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr_pre_log(&tmpByteData, oriData, pwRelBoundRatio, r2, r1, &tmpOutSize, min, max); |
---|
1620 | else |
---|
1621 | #ifdef HAVE_TIMECMPR |
---|
1622 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1623 | multisteps->compressionType = SZ_compress_args_double_NoCkRngeNoGzip_2D(&tmpByteData, oriData, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1624 | else |
---|
1625 | #endif |
---|
1626 | { |
---|
1627 | if(sz_with_regression == SZ_NO_REGRESSION) |
---|
1628 | SZ_compress_args_double_NoCkRngeNoGzip_2D(&tmpByteData, oriData, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1629 | else |
---|
1630 | tmpByteData = SZ_compress_double_2D_MDQ_nonblocked_with_blocked_regression(oriData, r2, r1, realPrecision, &tmpOutSize); |
---|
1631 | } |
---|
1632 | } |
---|
1633 | else |
---|
1634 | if (r4==0) |
---|
1635 | { |
---|
1636 | if(confparams_cpr->errorBoundMode>=PW_REL) |
---|
1637 | SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr_pre_log(&tmpByteData, oriData, pwRelBoundRatio, r3, r2, r1, &tmpOutSize, min, max); |
---|
1638 | else |
---|
1639 | #ifdef HAVE_TIMECMPR |
---|
1640 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1641 | multisteps->compressionType = SZ_compress_args_double_NoCkRngeNoGzip_3D(&tmpByteData, oriData, r3, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1642 | else |
---|
1643 | #endif |
---|
1644 | { |
---|
1645 | if(sz_with_regression == SZ_NO_REGRESSION) |
---|
1646 | SZ_compress_args_double_NoCkRngeNoGzip_3D(&tmpByteData, oriData, r3, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1647 | else |
---|
1648 | tmpByteData = SZ_compress_double_3D_MDQ_nonblocked_with_blocked_regression(oriData, r3, r2, r1, realPrecision, &tmpOutSize); |
---|
1649 | } |
---|
1650 | |
---|
1651 | |
---|
1652 | } |
---|
1653 | else |
---|
1654 | if (r5==0) |
---|
1655 | { |
---|
1656 | if(confparams_cpr->errorBoundMode>=PW_REL) |
---|
1657 | SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr_pre_log(&tmpByteData, oriData, pwRelBoundRatio, r4*r3, r2, r1, &tmpOutSize, min, max); |
---|
1658 | else |
---|
1659 | #ifdef HAVE_TIMECMPR |
---|
1660 | if(confparams_cpr->szMode == SZ_TEMPORAL_COMPRESSION) |
---|
1661 | multisteps->compressionType = SZ_compress_args_double_NoCkRngeNoGzip_4D(&tmpByteData, oriData, r4, r3, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1662 | else |
---|
1663 | #endif |
---|
1664 | { |
---|
1665 | if(sz_with_regression == SZ_NO_REGRESSION) |
---|
1666 | SZ_compress_args_double_NoCkRngeNoGzip_4D(&tmpByteData, oriData, r4, r3, r2, r1, realPrecision, &tmpOutSize, valueRangeSize, medianValue); |
---|
1667 | else |
---|
1668 | tmpByteData = SZ_compress_double_3D_MDQ_nonblocked_with_blocked_regression(oriData, r4*r3, r2, r1, realPrecision, &tmpOutSize); |
---|
1669 | } |
---|
1670 | |
---|
1671 | } |
---|
1672 | else |
---|
1673 | { |
---|
1674 | printf("Error: doesn't support 5 dimensions for now.\n"); |
---|
1675 | status = SZ_DERR; |
---|
1676 | } |
---|
1677 | |
---|
1678 | //Call Gzip to do the further compression. |
---|
1679 | if(confparams_cpr->szMode==SZ_BEST_SPEED) |
---|
1680 | { |
---|
1681 | *outSize = tmpOutSize; |
---|
1682 | *newByteData = tmpByteData; |
---|
1683 | } |
---|
1684 | else if(confparams_cpr->szMode==SZ_BEST_COMPRESSION || confparams_cpr->szMode==SZ_DEFAULT_COMPRESSION) |
---|
1685 | { |
---|
1686 | *outSize = sz_lossless_compress(confparams_cpr->losslessCompressor, confparams_cpr->gzipMode, tmpByteData, tmpOutSize, newByteData); |
---|
1687 | free(tmpByteData); |
---|
1688 | } |
---|
1689 | else |
---|
1690 | { |
---|
1691 | printf("Error: Wrong setting of confparams_cpr->szMode in the double compression.\n"); |
---|
1692 | status = SZ_MERR; |
---|
1693 | } |
---|
1694 | } |
---|
1695 | |
---|
1696 | return status; |
---|
1697 | } |
---|
1698 | |
---|
1699 | //TODO |
---|
1700 | int SZ_compress_args_double_subblock(unsigned char* compressedBytes, double *oriData, |
---|
1701 | size_t r5, size_t r4, size_t r3, size_t r2, size_t r1, |
---|
1702 | size_t s5, size_t s4, size_t s3, size_t s2, size_t s1, |
---|
1703 | size_t e5, size_t e4, size_t e3, size_t e2, size_t e1, |
---|
1704 | size_t *outSize, int errBoundMode, double absErr_Bound, double relBoundRatio) |
---|
1705 | { |
---|
1706 | int status = SZ_SCES; |
---|
1707 | double valueRangeSize = 0, medianValue = 0; |
---|
1708 | computeRangeSize_double_subblock(oriData, &valueRangeSize, &medianValue, r5, r4, r3, r2, r1, s5, s4, s3, s2, s1, e5, e4, e3, e2, e1); |
---|
1709 | |
---|
1710 | double realPrecision = getRealPrecision_double(valueRangeSize, errBoundMode, absErr_Bound, relBoundRatio, &status); |
---|
1711 | |
---|
1712 | if(valueRangeSize <= realPrecision) |
---|
1713 | { |
---|
1714 | //TODO |
---|
1715 | //SZ_compress_args_double_withinRange_subblock(); |
---|
1716 | } |
---|
1717 | else |
---|
1718 | { |
---|
1719 | if (r2==0) |
---|
1720 | { |
---|
1721 | //TODO |
---|
1722 | if(errBoundMode==PW_REL) |
---|
1723 | { |
---|
1724 | //TODO |
---|
1725 | //SZ_compress_args_double_NoCkRngeNoGzip_1D_pwr_subblock(); |
---|
1726 | printf ("Current subblock version does not support point-wise relative error bound.\n"); |
---|
1727 | } |
---|
1728 | else |
---|
1729 | SZ_compress_args_double_NoCkRnge_1D_subblock(compressedBytes, oriData, realPrecision, outSize, valueRangeSize, medianValue, r1, s1, e1); |
---|
1730 | } |
---|
1731 | else |
---|
1732 | if (r3==0) |
---|
1733 | { |
---|
1734 | if(errBoundMode==PW_REL) |
---|
1735 | { |
---|
1736 | //TODO |
---|
1737 | //SZ_compress_args_double_NoCkRngeNoGzip_2D_pwr_subblock(); |
---|
1738 | printf ("Current subblock version does not support point-wise relative error bound.\n"); |
---|
1739 | } |
---|
1740 | else |
---|
1741 | SZ_compress_args_double_NoCkRnge_2D_subblock(compressedBytes, oriData, realPrecision, outSize, valueRangeSize, medianValue, r2, r1, s2, s1, e2, e1); |
---|
1742 | } |
---|
1743 | else |
---|
1744 | if (r4==0) |
---|
1745 | { |
---|
1746 | if(errBoundMode==PW_REL) |
---|
1747 | { |
---|
1748 | //TODO |
---|
1749 | //SZ_compress_args_double_NoCkRngeNoGzip_3D_pwr_subblock(); |
---|
1750 | printf ("Current subblock version does not support point-wise relative error bound.\n"); |
---|
1751 | } |
---|
1752 | else |
---|
1753 | SZ_compress_args_double_NoCkRnge_3D_subblock(compressedBytes, oriData, realPrecision, outSize, valueRangeSize, medianValue, r3, r2, r1, s3, s2, s1, e3, e2, e1); |
---|
1754 | } |
---|
1755 | else |
---|
1756 | if (r5==0) |
---|
1757 | { |
---|
1758 | if(errBoundMode==PW_REL) |
---|
1759 | { |
---|
1760 | //TODO |
---|
1761 | //SZ_compress_args_double_NoCkRngeNoGzip_4D_pwr_subblock(); |
---|
1762 | printf ("Current subblock version does not support point-wise relative error bound.\n"); |
---|
1763 | } |
---|
1764 | else |
---|
1765 | SZ_compress_args_double_NoCkRnge_4D_subblock(compressedBytes, oriData, realPrecision, outSize, valueRangeSize, medianValue, r4, r3, r2, r1, s4, s3, s2, s1, e4, e3, e2, e1); |
---|
1766 | } |
---|
1767 | else |
---|
1768 | { |
---|
1769 | printf("Error: doesn't support 5 dimensions for now.\n"); |
---|
1770 | status = SZ_DERR; //dimension error |
---|
1771 | } |
---|
1772 | } |
---|
1773 | return status; |
---|
1774 | } |
---|
1775 | |
---|
1776 | void SZ_compress_args_double_NoCkRnge_1D_subblock(unsigned char* compressedBytes, double *oriData, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d, |
---|
1777 | size_t r1, size_t s1, size_t e1) |
---|
1778 | { |
---|
1779 | TightDataPointStorageD* tdps = SZ_compress_double_1D_MDQ_subblock(oriData, realPrecision, valueRangeSize, medianValue_d, r1, s1, e1); |
---|
1780 | |
---|
1781 | if (confparams_cpr->szMode==SZ_BEST_SPEED) |
---|
1782 | convertTDPStoFlatBytes_double_args(tdps, compressedBytes, outSize); |
---|
1783 | else if(confparams_cpr->szMode==SZ_BEST_COMPRESSION || confparams_cpr->szMode==SZ_DEFAULT_COMPRESSION) |
---|
1784 | { |
---|
1785 | unsigned char *tmpCompBytes; |
---|
1786 | size_t tmpOutSize; |
---|
1787 | convertTDPStoFlatBytes_double(tdps, &tmpCompBytes, &tmpOutSize); |
---|
1788 | *outSize = zlib_compress3(tmpCompBytes, tmpOutSize, compressedBytes, confparams_cpr->gzipMode); |
---|
1789 | free(tmpCompBytes); |
---|
1790 | } |
---|
1791 | else |
---|
1792 | { |
---|
1793 | printf ("Error: Wrong setting of confparams_cpr->szMode in the double compression.\n"); |
---|
1794 | } |
---|
1795 | |
---|
1796 | //TODO |
---|
1797 | // if(*outSize>dataLength*sizeof(double)) |
---|
1798 | // SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1799 | |
---|
1800 | free_TightDataPointStorageD(tdps); |
---|
1801 | } |
---|
1802 | |
---|
1803 | void SZ_compress_args_double_NoCkRnge_2D_subblock(unsigned char* compressedBytes, double *oriData, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d, |
---|
1804 | size_t r2, size_t r1, size_t s2, size_t s1, size_t e2, size_t e1) |
---|
1805 | { |
---|
1806 | TightDataPointStorageD* tdps = SZ_compress_double_2D_MDQ_subblock(oriData, realPrecision, valueRangeSize, medianValue_d, r2, r1, s2, s1, e2, e1); |
---|
1807 | |
---|
1808 | if (confparams_cpr->szMode==SZ_BEST_SPEED) |
---|
1809 | convertTDPStoFlatBytes_double_args(tdps, compressedBytes, outSize); |
---|
1810 | else if(confparams_cpr->szMode==SZ_BEST_COMPRESSION || confparams_cpr->szMode==SZ_DEFAULT_COMPRESSION) |
---|
1811 | { |
---|
1812 | unsigned char *tmpCompBytes; |
---|
1813 | size_t tmpOutSize; |
---|
1814 | convertTDPStoFlatBytes_double(tdps, &tmpCompBytes, &tmpOutSize); |
---|
1815 | *outSize = zlib_compress3(tmpCompBytes, tmpOutSize, compressedBytes, confparams_cpr->gzipMode); |
---|
1816 | free(tmpCompBytes); |
---|
1817 | } |
---|
1818 | else |
---|
1819 | { |
---|
1820 | printf ("Error: Wrong setting of confparams_cpr->szMode in the double compression.\n"); |
---|
1821 | } |
---|
1822 | |
---|
1823 | //TODO |
---|
1824 | // if(*outSize>dataLength*sizeof(double)) |
---|
1825 | // SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1826 | |
---|
1827 | free_TightDataPointStorageD(tdps); |
---|
1828 | } |
---|
1829 | |
---|
1830 | void SZ_compress_args_double_NoCkRnge_3D_subblock(unsigned char* compressedBytes, double *oriData, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d, |
---|
1831 | size_t r3, size_t r2, size_t r1, size_t s3, size_t s2, size_t s1, size_t e3, size_t e2, size_t e1) |
---|
1832 | { |
---|
1833 | TightDataPointStorageD* tdps = SZ_compress_double_3D_MDQ_subblock(oriData, realPrecision, valueRangeSize, medianValue_d, r3, r2, r1, s3, s2, s1, e3, e2, e1); |
---|
1834 | |
---|
1835 | if (confparams_cpr->szMode==SZ_BEST_SPEED) |
---|
1836 | convertTDPStoFlatBytes_double_args(tdps, compressedBytes, outSize); |
---|
1837 | else if(confparams_cpr->szMode==SZ_BEST_COMPRESSION || confparams_cpr->szMode==SZ_DEFAULT_COMPRESSION) |
---|
1838 | { |
---|
1839 | unsigned char *tmpCompBytes; |
---|
1840 | size_t tmpOutSize; |
---|
1841 | convertTDPStoFlatBytes_double(tdps, &tmpCompBytes, &tmpOutSize); |
---|
1842 | *outSize = zlib_compress3(tmpCompBytes, tmpOutSize, compressedBytes, confparams_cpr->gzipMode); |
---|
1843 | free(tmpCompBytes); |
---|
1844 | } |
---|
1845 | else |
---|
1846 | { |
---|
1847 | printf ("Error: Wrong setting of confparams_cpr->szMode in the double compression.\n"); |
---|
1848 | } |
---|
1849 | |
---|
1850 | //TODO |
---|
1851 | // if(*outSize>dataLength*sizeof(double)) |
---|
1852 | // SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1853 | |
---|
1854 | free_TightDataPointStorageD(tdps); |
---|
1855 | } |
---|
1856 | |
---|
1857 | void SZ_compress_args_double_NoCkRnge_4D_subblock(unsigned char* compressedBytes, double *oriData, double realPrecision, size_t *outSize, double valueRangeSize, double medianValue_d, |
---|
1858 | size_t r4, size_t r3, size_t r2, size_t r1, size_t s4, size_t s3, size_t s2, size_t s1, size_t e4, size_t e3, size_t e2, size_t e1) |
---|
1859 | { |
---|
1860 | TightDataPointStorageD* tdps = SZ_compress_double_4D_MDQ_subblock(oriData, realPrecision, valueRangeSize, medianValue_d, r4, r3, r2, r1, s4, s3, s2, s1, e4, e3, e2, e1); |
---|
1861 | |
---|
1862 | if (confparams_cpr->szMode==SZ_BEST_SPEED) |
---|
1863 | convertTDPStoFlatBytes_double_args(tdps, compressedBytes, outSize); |
---|
1864 | else if(confparams_cpr->szMode==SZ_BEST_COMPRESSION || confparams_cpr->szMode==SZ_DEFAULT_COMPRESSION) |
---|
1865 | { |
---|
1866 | unsigned char *tmpCompBytes; |
---|
1867 | size_t tmpOutSize; |
---|
1868 | convertTDPStoFlatBytes_double(tdps, &tmpCompBytes, &tmpOutSize); |
---|
1869 | *outSize = zlib_compress3(tmpCompBytes, tmpOutSize, compressedBytes, confparams_cpr->gzipMode); |
---|
1870 | free(tmpCompBytes); |
---|
1871 | } |
---|
1872 | else |
---|
1873 | { |
---|
1874 | printf ("Error: Wrong setting of confparams_cpr->szMode in the double compression.\n"); |
---|
1875 | } |
---|
1876 | |
---|
1877 | //TODO |
---|
1878 | // if(*outSize>dataLength*sizeof(double)) |
---|
1879 | // SZ_compress_args_double_StoreOriData(oriData, dataLength, tdps, newByteData, outSize); |
---|
1880 | |
---|
1881 | free_TightDataPointStorageD(tdps); |
---|
1882 | } |
---|
1883 | |
---|
1884 | |
---|
1885 | unsigned int optimize_intervals_double_1D_subblock(double *oriData, double realPrecision, size_t r1, size_t s1, size_t e1) |
---|
1886 | { |
---|
1887 | size_t dataLength = e1 - s1 + 1; |
---|
1888 | oriData = oriData + s1; |
---|
1889 | |
---|
1890 | size_t i = 0; |
---|
1891 | unsigned long radiusIndex; |
---|
1892 | double pred_value = 0, pred_err; |
---|
1893 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1894 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1895 | size_t totalSampleSize = dataLength/confparams_cpr->sampleDistance; |
---|
1896 | for(i=2;i<dataLength;i++) |
---|
1897 | { |
---|
1898 | if(i%confparams_cpr->sampleDistance==0) |
---|
1899 | { |
---|
1900 | pred_value = 2*oriData[i-1] - oriData[i-2]; |
---|
1901 | //pred_value = oriData[i-1]; |
---|
1902 | pred_err = fabs(pred_value - oriData[i]); |
---|
1903 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
1904 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
1905 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
1906 | intervals[radiusIndex]++; |
---|
1907 | } |
---|
1908 | } |
---|
1909 | //compute the appropriate number |
---|
1910 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
1911 | size_t sum = 0; |
---|
1912 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
1913 | { |
---|
1914 | sum += intervals[i]; |
---|
1915 | if(sum>targetCount) |
---|
1916 | break; |
---|
1917 | } |
---|
1918 | |
---|
1919 | if(i>=confparams_cpr->maxRangeRadius) |
---|
1920 | i = confparams_cpr->maxRangeRadius-1; |
---|
1921 | unsigned int accIntervals = 2*(i+1); |
---|
1922 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
1923 | |
---|
1924 | if(powerOf2<32) |
---|
1925 | powerOf2 = 32; |
---|
1926 | |
---|
1927 | free(intervals); |
---|
1928 | return powerOf2; |
---|
1929 | } |
---|
1930 | |
---|
1931 | unsigned int optimize_intervals_double_2D_subblock(double *oriData, double realPrecision, size_t r1, size_t r2, size_t s1, size_t s2, size_t e1, size_t e2) |
---|
1932 | { |
---|
1933 | size_t R1 = e1 - s1 + 1; |
---|
1934 | size_t R2 = e2 - s2 + 1; |
---|
1935 | |
---|
1936 | size_t i,j, index; |
---|
1937 | unsigned long radiusIndex; |
---|
1938 | double pred_value = 0, pred_err; |
---|
1939 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1940 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1941 | size_t totalSampleSize = R1*R2/confparams_cpr->sampleDistance; |
---|
1942 | for(i=s1+1;i<=e1;i++) |
---|
1943 | { |
---|
1944 | for(j=s2+1;j<=e2;j++) |
---|
1945 | { |
---|
1946 | if((i+j)%confparams_cpr->sampleDistance==0) |
---|
1947 | { |
---|
1948 | index = i*r2+j; |
---|
1949 | pred_value = oriData[index-1] + oriData[index-r2] - oriData[index-r2-1]; |
---|
1950 | pred_err = fabs(pred_value - oriData[index]); |
---|
1951 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
1952 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
1953 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
1954 | intervals[radiusIndex]++; |
---|
1955 | } |
---|
1956 | } |
---|
1957 | } |
---|
1958 | //compute the appropriate number |
---|
1959 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
1960 | size_t sum = 0; |
---|
1961 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
1962 | { |
---|
1963 | sum += intervals[i]; |
---|
1964 | if(sum>targetCount) |
---|
1965 | break; |
---|
1966 | } |
---|
1967 | if(i>=confparams_cpr->maxRangeRadius) |
---|
1968 | i = confparams_cpr->maxRangeRadius-1; |
---|
1969 | unsigned int accIntervals = 2*(i+1); |
---|
1970 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
1971 | |
---|
1972 | if(powerOf2<32) |
---|
1973 | powerOf2 = 32; |
---|
1974 | |
---|
1975 | free(intervals); |
---|
1976 | return powerOf2; |
---|
1977 | } |
---|
1978 | |
---|
1979 | unsigned int optimize_intervals_double_3D_subblock(double *oriData, double realPrecision, size_t r1, size_t r2, size_t r3, size_t s1, size_t s2, size_t s3, size_t e1, size_t e2, size_t e3) |
---|
1980 | { |
---|
1981 | size_t R1 = e1 - s1 + 1; |
---|
1982 | size_t R2 = e2 - s2 + 1; |
---|
1983 | size_t R3 = e3 - s3 + 1; |
---|
1984 | |
---|
1985 | size_t r23 = r2*r3; |
---|
1986 | |
---|
1987 | size_t i,j,k, index; |
---|
1988 | unsigned long radiusIndex; |
---|
1989 | double pred_value = 0, pred_err; |
---|
1990 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1991 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
1992 | size_t totalSampleSize = R1*R2*R3/confparams_cpr->sampleDistance; |
---|
1993 | for(i=s1+1;i<=e1;i++) |
---|
1994 | { |
---|
1995 | for(j=s2+1;j<=e2;j++) |
---|
1996 | { |
---|
1997 | for(k=s3+1;k<=e3;k++) |
---|
1998 | { |
---|
1999 | if((i+j+k)%confparams_cpr->sampleDistance==0) |
---|
2000 | { |
---|
2001 | index = i*r23+j*r3+k; |
---|
2002 | pred_value = oriData[index-1] + oriData[index-r3] + oriData[index-r23] |
---|
2003 | - oriData[index-1-r23] - oriData[index-r3-1] - oriData[index-r3-r23] + oriData[index-r3-r23-1]; |
---|
2004 | pred_err = fabs(pred_value - oriData[index]); |
---|
2005 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
2006 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
2007 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
2008 | intervals[radiusIndex]++; |
---|
2009 | } |
---|
2010 | } |
---|
2011 | |
---|
2012 | } |
---|
2013 | } |
---|
2014 | //compute the appropriate number |
---|
2015 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
2016 | size_t sum = 0; |
---|
2017 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
2018 | { |
---|
2019 | sum += intervals[i]; |
---|
2020 | if(sum>targetCount) |
---|
2021 | break; |
---|
2022 | } |
---|
2023 | if(i>=confparams_cpr->maxRangeRadius) |
---|
2024 | i = confparams_cpr->maxRangeRadius-1; |
---|
2025 | |
---|
2026 | unsigned int accIntervals = 2*(i+1); |
---|
2027 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
2028 | |
---|
2029 | if(powerOf2<32) |
---|
2030 | powerOf2 = 32; |
---|
2031 | |
---|
2032 | free(intervals); |
---|
2033 | return powerOf2; |
---|
2034 | } |
---|
2035 | |
---|
2036 | unsigned int optimize_intervals_double_4D_subblock(double *oriData, double realPrecision, |
---|
2037 | size_t r1, size_t r2, size_t r3, size_t r4, size_t s1, size_t s2, size_t s3, size_t s4, size_t e1, size_t e2, size_t e3, size_t e4) |
---|
2038 | { |
---|
2039 | size_t R1 = e1 - s1 + 1; |
---|
2040 | size_t R2 = e2 - s2 + 1; |
---|
2041 | size_t R3 = e3 - s3 + 1; |
---|
2042 | size_t R4 = e4 - s4 + 1; |
---|
2043 | |
---|
2044 | size_t r34 = r3*r4; |
---|
2045 | size_t r234 = r2*r3*r4; |
---|
2046 | |
---|
2047 | size_t i,j,k,l, index; |
---|
2048 | unsigned long radiusIndex; |
---|
2049 | double pred_value = 0, pred_err; |
---|
2050 | int *intervals = (int*)malloc(confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
2051 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(int)); |
---|
2052 | size_t totalSampleSize = R1*R2*R3*R4/confparams_cpr->sampleDistance; |
---|
2053 | for(i=s1+1;i<=e1;i++) |
---|
2054 | { |
---|
2055 | for(j=s2+1;j<=e2;j++) |
---|
2056 | { |
---|
2057 | for(k=s3+1;k<=e3;k++) |
---|
2058 | { |
---|
2059 | for(l=s4+1;l<=e4;l++) |
---|
2060 | { |
---|
2061 | if((i+j+k+l)%confparams_cpr->sampleDistance==0) |
---|
2062 | { |
---|
2063 | index = i*r234+j*r34+k*r4+l; |
---|
2064 | pred_value = oriData[index-1] + oriData[index-r4] + oriData[index-r34] |
---|
2065 | - oriData[index-1-r34] - oriData[index-r4-1] - oriData[index-r4-r34] + oriData[index-r4-r34-1]; |
---|
2066 | pred_err = fabs(pred_value - oriData[index]); |
---|
2067 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
2068 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
2069 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
2070 | intervals[radiusIndex]++; |
---|
2071 | } |
---|
2072 | } |
---|
2073 | } |
---|
2074 | |
---|
2075 | } |
---|
2076 | } |
---|
2077 | //compute the appropriate number |
---|
2078 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
2079 | size_t sum = 0; |
---|
2080 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
2081 | { |
---|
2082 | sum += intervals[i]; |
---|
2083 | if(sum>targetCount) |
---|
2084 | break; |
---|
2085 | } |
---|
2086 | if(i>=confparams_cpr->maxRangeRadius) |
---|
2087 | i = confparams_cpr->maxRangeRadius-1; |
---|
2088 | |
---|
2089 | unsigned int accIntervals = 2*(i+1); |
---|
2090 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
2091 | |
---|
2092 | if(powerOf2<32) |
---|
2093 | powerOf2 = 32; |
---|
2094 | |
---|
2095 | free(intervals); |
---|
2096 | return powerOf2; |
---|
2097 | } |
---|
2098 | |
---|
2099 | TightDataPointStorageD* SZ_compress_double_1D_MDQ_subblock(double *oriData, double realPrecision, double valueRangeSize, double medianValue_d, |
---|
2100 | size_t r1, size_t s1, size_t e1) |
---|
2101 | { |
---|
2102 | size_t dataLength = e1 - s1 + 1; |
---|
2103 | |
---|
2104 | unsigned int quantization_intervals; |
---|
2105 | if(exe_params->optQuantMode==1) |
---|
2106 | quantization_intervals = optimize_intervals_double_1D_subblock(oriData, realPrecision, r1, s1, e1); |
---|
2107 | else |
---|
2108 | quantization_intervals = exe_params->intvCapacity; |
---|
2109 | updateQuantizationInfo(quantization_intervals); |
---|
2110 | |
---|
2111 | size_t i; |
---|
2112 | int reqLength; |
---|
2113 | double medianValue = medianValue_d; |
---|
2114 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
2115 | |
---|
2116 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
2117 | |
---|
2118 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
2119 | |
---|
2120 | double* spaceFillingValue = oriData + s1; // |
---|
2121 | |
---|
2122 | DynamicIntArray *exactLeadNumArray; |
---|
2123 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
2124 | |
---|
2125 | DynamicByteArray *exactMidByteArray; |
---|
2126 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
2127 | |
---|
2128 | DynamicIntArray *resiBitArray; |
---|
2129 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
2130 | |
---|
2131 | type[0] = 0; |
---|
2132 | |
---|
2133 | unsigned char preDataBytes[8]; |
---|
2134 | longToBytes_bigEndian(preDataBytes, 0); |
---|
2135 | |
---|
2136 | int reqBytesLength = reqLength/8; |
---|
2137 | int resiBitsLength = reqLength%8; |
---|
2138 | double last3CmprsData[3] = {0}; |
---|
2139 | |
---|
2140 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
2141 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
2142 | |
---|
2143 | //add the first data |
---|
2144 | compressSingleDoubleValue(vce, spaceFillingValue[0], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2145 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2146 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2147 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2148 | listAdd_double(last3CmprsData, vce->data); |
---|
2149 | |
---|
2150 | //add the second data |
---|
2151 | type[1] = 0; |
---|
2152 | compressSingleDoubleValue(vce, spaceFillingValue[1], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2153 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2154 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2155 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2156 | listAdd_double(last3CmprsData, vce->data); |
---|
2157 | |
---|
2158 | int state; |
---|
2159 | double checkRadius; |
---|
2160 | double curData; |
---|
2161 | double pred; |
---|
2162 | double predAbsErr; |
---|
2163 | checkRadius = (exe_params->intvCapacity-1)*realPrecision; |
---|
2164 | double interval = 2*realPrecision; |
---|
2165 | |
---|
2166 | for(i=2;i<dataLength;i++) |
---|
2167 | { |
---|
2168 | //printf("%.30G\n",last3CmprsData[0]); |
---|
2169 | curData = spaceFillingValue[i]; |
---|
2170 | pred = 2*last3CmprsData[0] - last3CmprsData[1]; |
---|
2171 | //pred = last3CmprsData[0]; |
---|
2172 | predAbsErr = fabs(curData - pred); |
---|
2173 | if(predAbsErr<=checkRadius) |
---|
2174 | { |
---|
2175 | state = (predAbsErr/realPrecision+1)/2; |
---|
2176 | if(curData>=pred) |
---|
2177 | { |
---|
2178 | type[i] = exe_params->intvRadius+state; |
---|
2179 | pred = pred + state*interval; |
---|
2180 | } |
---|
2181 | else //curData<pred |
---|
2182 | { |
---|
2183 | type[i] = exe_params->intvRadius-state; |
---|
2184 | pred = pred - state*interval; |
---|
2185 | } |
---|
2186 | listAdd_double(last3CmprsData, pred); |
---|
2187 | continue; |
---|
2188 | } |
---|
2189 | |
---|
2190 | //unpredictable data processing |
---|
2191 | type[i] = 0; |
---|
2192 | compressSingleDoubleValue(vce, curData, realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2193 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2194 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2195 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2196 | |
---|
2197 | listAdd_double(last3CmprsData, vce->data); |
---|
2198 | }//end of for |
---|
2199 | |
---|
2200 | size_t exactDataNum = exactLeadNumArray->size; |
---|
2201 | |
---|
2202 | TightDataPointStorageD* tdps; |
---|
2203 | |
---|
2204 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
2205 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
2206 | exactLeadNumArray->array, |
---|
2207 | resiBitArray->array, resiBitArray->size, |
---|
2208 | resiBitsLength, |
---|
2209 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
2210 | |
---|
2211 | //free memory |
---|
2212 | free_DIA(exactLeadNumArray); |
---|
2213 | free_DIA(resiBitArray); |
---|
2214 | free(type); |
---|
2215 | free(vce); |
---|
2216 | free(lce); |
---|
2217 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
2218 | |
---|
2219 | return tdps; |
---|
2220 | } |
---|
2221 | |
---|
2222 | |
---|
2223 | TightDataPointStorageD* SZ_compress_double_2D_MDQ_subblock(double *oriData, double realPrecision, double valueRangeSize, double medianValue_d, |
---|
2224 | size_t r1, size_t r2, size_t s1, size_t s2, size_t e1, size_t e2) |
---|
2225 | { |
---|
2226 | unsigned int quantization_intervals; |
---|
2227 | if(exe_params->optQuantMode==1) |
---|
2228 | { |
---|
2229 | quantization_intervals = optimize_intervals_double_2D_subblock(oriData, realPrecision, r1, r2, s1, s2, e1, e2); |
---|
2230 | updateQuantizationInfo(quantization_intervals); |
---|
2231 | } |
---|
2232 | else |
---|
2233 | quantization_intervals = exe_params->intvCapacity; |
---|
2234 | |
---|
2235 | size_t i,j; |
---|
2236 | int reqLength; |
---|
2237 | double pred1D, pred2D; |
---|
2238 | double diff = 0.0; |
---|
2239 | double itvNum = 0; |
---|
2240 | double *P0, *P1; |
---|
2241 | |
---|
2242 | size_t R1 = e1 - s1 + 1; |
---|
2243 | size_t R2 = e2 - s2 + 1; |
---|
2244 | size_t dataLength = R1*R2; |
---|
2245 | |
---|
2246 | P0 = (double*)malloc(R2*sizeof(double)); |
---|
2247 | memset(P0, 0, R2*sizeof(double)); |
---|
2248 | P1 = (double*)malloc(R2*sizeof(double)); |
---|
2249 | memset(P1, 0, R2*sizeof(double)); |
---|
2250 | |
---|
2251 | double medianValue = medianValue_d; |
---|
2252 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
2253 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
2254 | |
---|
2255 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
2256 | |
---|
2257 | double* spaceFillingValue = oriData; // |
---|
2258 | |
---|
2259 | DynamicIntArray *exactLeadNumArray; |
---|
2260 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
2261 | |
---|
2262 | DynamicByteArray *exactMidByteArray; |
---|
2263 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
2264 | |
---|
2265 | DynamicIntArray *resiBitArray; |
---|
2266 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
2267 | |
---|
2268 | unsigned char preDataBytes[8]; |
---|
2269 | longToBytes_bigEndian(preDataBytes, 0); |
---|
2270 | |
---|
2271 | int reqBytesLength = reqLength/8; |
---|
2272 | int resiBitsLength = reqLength%8; |
---|
2273 | |
---|
2274 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
2275 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
2276 | |
---|
2277 | /* Process Row-s1 data s2*/ |
---|
2278 | size_t gIndex; |
---|
2279 | size_t lIndex; |
---|
2280 | |
---|
2281 | gIndex = s1*r2+s2; |
---|
2282 | lIndex = 0; |
---|
2283 | |
---|
2284 | type[lIndex] = 0; |
---|
2285 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2286 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2287 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2288 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2289 | P1[0] = vce->data; |
---|
2290 | |
---|
2291 | /* Process Row-s1 data s2+1*/ |
---|
2292 | gIndex = s1*r2+(s2+1); |
---|
2293 | lIndex = 1; |
---|
2294 | |
---|
2295 | pred1D = P1[0]; |
---|
2296 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2297 | |
---|
2298 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2299 | |
---|
2300 | if (itvNum < exe_params->intvCapacity) |
---|
2301 | { |
---|
2302 | if (diff < 0) itvNum = -itvNum; |
---|
2303 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2304 | P1[1] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2305 | } |
---|
2306 | else |
---|
2307 | { |
---|
2308 | type[lIndex] = 0; |
---|
2309 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2310 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2311 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2312 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2313 | P1[1] = vce->data; |
---|
2314 | } |
---|
2315 | |
---|
2316 | /* Process Row-s1 data s2+2 --> data e2 */ |
---|
2317 | for (j = 2; j < R2; j++) |
---|
2318 | { |
---|
2319 | gIndex = s1*r2+(s2+j); |
---|
2320 | lIndex = j; |
---|
2321 | |
---|
2322 | pred1D = 2*P1[j-1] - P1[j-2]; |
---|
2323 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2324 | |
---|
2325 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2326 | |
---|
2327 | if (itvNum < exe_params->intvCapacity) |
---|
2328 | { |
---|
2329 | if (diff < 0) itvNum = -itvNum; |
---|
2330 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2331 | P1[j] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2332 | } |
---|
2333 | else |
---|
2334 | { |
---|
2335 | type[lIndex] = 0; |
---|
2336 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2337 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2338 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2339 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2340 | P1[j] = vce->data; |
---|
2341 | } |
---|
2342 | } |
---|
2343 | |
---|
2344 | /* Process Row-s1+1 --> Row-e1 */ |
---|
2345 | for (i = 1; i < R1; i++) |
---|
2346 | { |
---|
2347 | /* Process row-s1+i data s2 */ |
---|
2348 | gIndex = (s1+i)*r2+s2; |
---|
2349 | lIndex = i*R2; |
---|
2350 | |
---|
2351 | pred1D = P1[0]; |
---|
2352 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2353 | |
---|
2354 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2355 | |
---|
2356 | if (itvNum < exe_params->intvCapacity) |
---|
2357 | { |
---|
2358 | if (diff < 0) itvNum = -itvNum; |
---|
2359 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2360 | P0[0] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2361 | } |
---|
2362 | else |
---|
2363 | { |
---|
2364 | type[lIndex] = 0; |
---|
2365 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2366 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2367 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2368 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2369 | P0[0] = vce->data; |
---|
2370 | } |
---|
2371 | |
---|
2372 | /* Process row-s1+i data s2+1 --> e2 */ |
---|
2373 | for (j = 1; j < R2; j++) |
---|
2374 | { |
---|
2375 | gIndex = (s1+i)*r2+(s2+j); |
---|
2376 | lIndex = i*R2+j; |
---|
2377 | |
---|
2378 | pred2D = P0[j-1] + P1[j] - P1[j-1]; |
---|
2379 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
2380 | |
---|
2381 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2382 | |
---|
2383 | if (itvNum < exe_params->intvCapacity) |
---|
2384 | { |
---|
2385 | if (diff < 0) itvNum = -itvNum; |
---|
2386 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2387 | P0[j] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2388 | } |
---|
2389 | else |
---|
2390 | { |
---|
2391 | type[lIndex] = 0; |
---|
2392 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2393 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2394 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2395 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2396 | P0[j] = vce->data; |
---|
2397 | } |
---|
2398 | } |
---|
2399 | |
---|
2400 | double *Pt; |
---|
2401 | Pt = P1; |
---|
2402 | P1 = P0; |
---|
2403 | P0 = Pt; |
---|
2404 | } |
---|
2405 | |
---|
2406 | free(P0); |
---|
2407 | free(P1); |
---|
2408 | size_t exactDataNum = exactLeadNumArray->size; |
---|
2409 | |
---|
2410 | TightDataPointStorageD* tdps; |
---|
2411 | |
---|
2412 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
2413 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
2414 | exactLeadNumArray->array, |
---|
2415 | resiBitArray->array, resiBitArray->size, |
---|
2416 | resiBitsLength, |
---|
2417 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
2418 | |
---|
2419 | //free memory |
---|
2420 | free_DIA(exactLeadNumArray); |
---|
2421 | free_DIA(resiBitArray); |
---|
2422 | free(type); |
---|
2423 | free(vce); |
---|
2424 | free(lce); |
---|
2425 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
2426 | |
---|
2427 | return tdps; |
---|
2428 | } |
---|
2429 | |
---|
2430 | TightDataPointStorageD* SZ_compress_double_3D_MDQ_subblock(double *oriData, double realPrecision, double valueRangeSize, double medianValue_d, |
---|
2431 | size_t r1, size_t r2, size_t r3, size_t s1, size_t s2, size_t s3, size_t e1, size_t e2, size_t e3) |
---|
2432 | { |
---|
2433 | unsigned int quantization_intervals; |
---|
2434 | if(exe_params->optQuantMode==1) |
---|
2435 | { |
---|
2436 | quantization_intervals = optimize_intervals_double_3D_subblock(oriData, realPrecision, r1, r2, r3, s1, s2, s3, e1, e2, e3); |
---|
2437 | updateQuantizationInfo(quantization_intervals); |
---|
2438 | } |
---|
2439 | else |
---|
2440 | quantization_intervals = exe_params->intvCapacity; |
---|
2441 | |
---|
2442 | size_t i,j,k; |
---|
2443 | int reqLength; |
---|
2444 | double pred1D, pred2D, pred3D; |
---|
2445 | double diff = 0.0; |
---|
2446 | double itvNum = 0; |
---|
2447 | double *P0, *P1; |
---|
2448 | |
---|
2449 | size_t R1 = e1 - s1 + 1; |
---|
2450 | size_t R2 = e2 - s2 + 1; |
---|
2451 | size_t R3 = e3 - s3 + 1; |
---|
2452 | size_t dataLength = R1*R2*R3; |
---|
2453 | |
---|
2454 | size_t r23 = r2*r3; |
---|
2455 | size_t R23 = R2*R3; |
---|
2456 | |
---|
2457 | P0 = (double*)malloc(R23*sizeof(double)); |
---|
2458 | P1 = (double*)malloc(R23*sizeof(double)); |
---|
2459 | |
---|
2460 | double medianValue = medianValue_d; |
---|
2461 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
2462 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
2463 | |
---|
2464 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
2465 | |
---|
2466 | double* spaceFillingValue = oriData; // |
---|
2467 | |
---|
2468 | DynamicIntArray *exactLeadNumArray; |
---|
2469 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
2470 | |
---|
2471 | DynamicByteArray *exactMidByteArray; |
---|
2472 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
2473 | |
---|
2474 | DynamicIntArray *resiBitArray; |
---|
2475 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
2476 | |
---|
2477 | unsigned char preDataBytes[8]; |
---|
2478 | longToBytes_bigEndian(preDataBytes, 0); |
---|
2479 | |
---|
2480 | int reqBytesLength = reqLength/8; |
---|
2481 | int resiBitsLength = reqLength%8; |
---|
2482 | |
---|
2483 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
2484 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
2485 | |
---|
2486 | |
---|
2487 | /////////////////////////// Process layer-s1 /////////////////////////// |
---|
2488 | /* Process Row-s2 data s3*/ |
---|
2489 | size_t gIndex; //global index |
---|
2490 | size_t lIndex; //local index |
---|
2491 | size_t index2D; //local 2D index |
---|
2492 | |
---|
2493 | gIndex = s1*r23+s2*r3+s3; |
---|
2494 | lIndex = 0; |
---|
2495 | index2D = 0; |
---|
2496 | |
---|
2497 | type[lIndex] = 0; |
---|
2498 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2499 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2500 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2501 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2502 | P1[index2D] = vce->data; |
---|
2503 | |
---|
2504 | /* Process Row-s2 data s3+1*/ |
---|
2505 | gIndex = s1*r23+s2*r3+s3+1; |
---|
2506 | lIndex = 1; |
---|
2507 | index2D = 1; |
---|
2508 | |
---|
2509 | pred1D = P1[index2D-1]; |
---|
2510 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2511 | |
---|
2512 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2513 | |
---|
2514 | if (itvNum < exe_params->intvCapacity) |
---|
2515 | { |
---|
2516 | if (diff < 0) itvNum = -itvNum; |
---|
2517 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2518 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2519 | } |
---|
2520 | else |
---|
2521 | { |
---|
2522 | type[lIndex] = 0; |
---|
2523 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2524 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2525 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2526 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2527 | P1[index2D] = vce->data; |
---|
2528 | } |
---|
2529 | |
---|
2530 | /* Process Row-s2 data s3+2 --> data e3 */ |
---|
2531 | for (j = 2; j < R3; j++) |
---|
2532 | { |
---|
2533 | gIndex = s1*r23+s2*r3+s3+j; |
---|
2534 | lIndex = j; |
---|
2535 | index2D = j; |
---|
2536 | |
---|
2537 | pred1D = 2*P1[index2D-1] - P1[index2D-2]; |
---|
2538 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2539 | |
---|
2540 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2541 | |
---|
2542 | if (itvNum < exe_params->intvCapacity) |
---|
2543 | { |
---|
2544 | if (diff < 0) itvNum = -itvNum; |
---|
2545 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2546 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2547 | } |
---|
2548 | else |
---|
2549 | { |
---|
2550 | type[lIndex] = 0; |
---|
2551 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2552 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2553 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2554 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2555 | P1[index2D] = vce->data; |
---|
2556 | } |
---|
2557 | } |
---|
2558 | |
---|
2559 | /* Process Row-s2+1 --> Row-e2 */ |
---|
2560 | for (i = 1; i < R2; i++) |
---|
2561 | { |
---|
2562 | /* Process row-s2+i data s3 */ |
---|
2563 | gIndex = s1*r23+(s2+i)*r3+s3; |
---|
2564 | lIndex = i*R3; |
---|
2565 | index2D = i*R3; |
---|
2566 | |
---|
2567 | pred1D = P1[index2D-R3]; |
---|
2568 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2569 | |
---|
2570 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2571 | |
---|
2572 | if (itvNum < exe_params->intvCapacity) |
---|
2573 | { |
---|
2574 | if (diff < 0) itvNum = -itvNum; |
---|
2575 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2576 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2577 | } |
---|
2578 | else |
---|
2579 | { |
---|
2580 | type[lIndex] = 0; |
---|
2581 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2582 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2583 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2584 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2585 | P1[index2D] = vce->data; |
---|
2586 | } |
---|
2587 | |
---|
2588 | /* Process row-s2+i data s3+1 --> data e3*/ |
---|
2589 | for (j = 1; j < R3; j++) |
---|
2590 | { |
---|
2591 | gIndex = s1*r23+(s2+i)*r3+s3+j; |
---|
2592 | lIndex = i*R3+j; |
---|
2593 | index2D = i*R3+j; |
---|
2594 | |
---|
2595 | pred2D = P1[index2D-1] + P1[index2D-R3] - P1[index2D-R3-1]; |
---|
2596 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
2597 | |
---|
2598 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2599 | |
---|
2600 | if (itvNum < exe_params->intvCapacity) |
---|
2601 | { |
---|
2602 | if (diff < 0) itvNum = -itvNum; |
---|
2603 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2604 | P1[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2605 | } |
---|
2606 | else |
---|
2607 | { |
---|
2608 | type[lIndex] = 0; |
---|
2609 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2610 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2611 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2612 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2613 | P1[index2D] = vce->data; |
---|
2614 | } |
---|
2615 | } |
---|
2616 | } |
---|
2617 | |
---|
2618 | |
---|
2619 | /////////////////////////// Process layer-s1+1 --> layer-e1 /////////////////////////// |
---|
2620 | |
---|
2621 | for (k = 1; k < R1; k++) |
---|
2622 | { |
---|
2623 | /* Process Row-s2 data s3*/ |
---|
2624 | gIndex = (s1+k)*r23+s2*r3+s3; |
---|
2625 | lIndex = k*R23; |
---|
2626 | index2D = 0; |
---|
2627 | |
---|
2628 | pred1D = P1[index2D]; |
---|
2629 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2630 | |
---|
2631 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2632 | |
---|
2633 | if (itvNum < exe_params->intvCapacity) |
---|
2634 | { |
---|
2635 | if (diff < 0) itvNum = -itvNum; |
---|
2636 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2637 | P0[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2638 | } |
---|
2639 | else |
---|
2640 | { |
---|
2641 | type[lIndex] = 0; |
---|
2642 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2643 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2644 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2645 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2646 | P0[index2D] = vce->data; |
---|
2647 | } |
---|
2648 | |
---|
2649 | |
---|
2650 | /* Process Row-s2 data s3+1 --> data e3 */ |
---|
2651 | for (j = 1; j < R3; j++) |
---|
2652 | { |
---|
2653 | gIndex = (s1+k)*r23+s2*r3+s3+j; |
---|
2654 | lIndex = k*R23+j; |
---|
2655 | index2D = j; |
---|
2656 | |
---|
2657 | pred2D = P0[index2D-1] + P1[index2D] - P1[index2D-1]; |
---|
2658 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
2659 | |
---|
2660 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2661 | |
---|
2662 | if (itvNum < exe_params->intvCapacity) |
---|
2663 | { |
---|
2664 | if (diff < 0) itvNum = -itvNum; |
---|
2665 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2666 | P0[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2667 | } |
---|
2668 | else |
---|
2669 | { |
---|
2670 | type[lIndex] = 0; |
---|
2671 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2672 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2673 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2674 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2675 | P0[index2D] = vce->data; |
---|
2676 | } |
---|
2677 | } |
---|
2678 | |
---|
2679 | /* Process Row-s2+1 --> Row-e2 */ |
---|
2680 | for (i = 1; i < R2; i++) |
---|
2681 | { |
---|
2682 | /* Process Row-s2+i data s3 */ |
---|
2683 | gIndex = (s1+k)*r23+(s2+i)*r3+s3; |
---|
2684 | lIndex = k*R23+i*R3; |
---|
2685 | index2D = i*R3; |
---|
2686 | |
---|
2687 | pred2D = P0[index2D-R3] + P1[index2D] - P1[index2D-R3]; |
---|
2688 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
2689 | |
---|
2690 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2691 | |
---|
2692 | if (itvNum < exe_params->intvCapacity) |
---|
2693 | { |
---|
2694 | if (diff < 0) itvNum = -itvNum; |
---|
2695 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2696 | P0[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2697 | } |
---|
2698 | else |
---|
2699 | { |
---|
2700 | type[lIndex] = 0; |
---|
2701 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2702 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2703 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2704 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2705 | P0[index2D] = vce->data; |
---|
2706 | } |
---|
2707 | |
---|
2708 | /* Process Row-s2+i data s3+1 --> data e3 */ |
---|
2709 | for (j = 1; j < R3; j++) |
---|
2710 | { |
---|
2711 | gIndex = (s1+k)*r23+(s2+i)*r3+s3+j; |
---|
2712 | lIndex = k*R23+i*R3+j; |
---|
2713 | index2D = i*R3+j; |
---|
2714 | |
---|
2715 | pred3D = P0[index2D-1] + P0[index2D-R3]+ P1[index2D] - P0[index2D-R3-1] - P1[index2D-R3] - P1[index2D-1] + P1[index2D-R3-1]; |
---|
2716 | diff = spaceFillingValue[gIndex] - pred3D; |
---|
2717 | |
---|
2718 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2719 | |
---|
2720 | if (itvNum < exe_params->intvCapacity) |
---|
2721 | { |
---|
2722 | if (diff < 0) itvNum = -itvNum; |
---|
2723 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2724 | P0[index2D] = pred3D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2725 | } |
---|
2726 | else |
---|
2727 | { |
---|
2728 | type[lIndex] = 0; |
---|
2729 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2730 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2731 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2732 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2733 | P0[index2D] = vce->data; |
---|
2734 | } |
---|
2735 | } |
---|
2736 | } |
---|
2737 | |
---|
2738 | double *Pt; |
---|
2739 | Pt = P1; |
---|
2740 | P1 = P0; |
---|
2741 | P0 = Pt; |
---|
2742 | } |
---|
2743 | |
---|
2744 | free(P0); |
---|
2745 | free(P1); |
---|
2746 | size_t exactDataNum = exactLeadNumArray->size; |
---|
2747 | |
---|
2748 | TightDataPointStorageD* tdps; |
---|
2749 | |
---|
2750 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
2751 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
2752 | exactLeadNumArray->array, |
---|
2753 | resiBitArray->array, resiBitArray->size, |
---|
2754 | resiBitsLength, |
---|
2755 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
2756 | |
---|
2757 | //free memory |
---|
2758 | free_DIA(exactLeadNumArray); |
---|
2759 | free_DIA(resiBitArray); |
---|
2760 | free(type); |
---|
2761 | free(vce); |
---|
2762 | free(lce); |
---|
2763 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
2764 | |
---|
2765 | return tdps; |
---|
2766 | } |
---|
2767 | |
---|
2768 | TightDataPointStorageD* SZ_compress_double_4D_MDQ_subblock(double *oriData, double realPrecision, double valueRangeSize, double medianValue_d, |
---|
2769 | size_t r1, size_t r2, size_t r3, size_t r4, size_t s1, size_t s2, size_t s3, size_t s4, size_t e1, size_t e2, size_t e3, size_t e4) |
---|
2770 | { |
---|
2771 | unsigned int quantization_intervals; |
---|
2772 | if(exe_params->optQuantMode==1) |
---|
2773 | { |
---|
2774 | quantization_intervals = optimize_intervals_double_4D_subblock(oriData, realPrecision, r1, r2, r3, r4, s1, s2, s3, s4, e1, e2, e3, e4); |
---|
2775 | updateQuantizationInfo(quantization_intervals); |
---|
2776 | } |
---|
2777 | else |
---|
2778 | quantization_intervals = exe_params->intvCapacity; |
---|
2779 | |
---|
2780 | size_t i,j,k; |
---|
2781 | int reqLength; |
---|
2782 | double pred1D, pred2D, pred3D; |
---|
2783 | double diff = 0.0; |
---|
2784 | double itvNum = 0; |
---|
2785 | double *P0, *P1; |
---|
2786 | |
---|
2787 | size_t R1 = e1 - s1 + 1; |
---|
2788 | size_t R2 = e2 - s2 + 1; |
---|
2789 | size_t R3 = e3 - s3 + 1; |
---|
2790 | size_t R4 = e4 - s4 + 1; |
---|
2791 | |
---|
2792 | size_t dataLength = R1*R2*R3*R4; |
---|
2793 | |
---|
2794 | size_t r34 = r3*r4; |
---|
2795 | size_t r234 = r2*r3*r4; |
---|
2796 | size_t R34 = R3*R4; |
---|
2797 | size_t R234 = R2*R3*R4; |
---|
2798 | |
---|
2799 | P0 = (double*)malloc(R34*sizeof(double)); |
---|
2800 | P1 = (double*)malloc(R34*sizeof(double)); |
---|
2801 | |
---|
2802 | double medianValue = medianValue_d; |
---|
2803 | short radExpo = getExponent_double(valueRangeSize/2); |
---|
2804 | computeReqLength_double(realPrecision, radExpo, &reqLength, &medianValue); |
---|
2805 | |
---|
2806 | int* type = (int*) malloc(dataLength*sizeof(int)); |
---|
2807 | |
---|
2808 | double* spaceFillingValue = oriData; // |
---|
2809 | |
---|
2810 | DynamicIntArray *exactLeadNumArray; |
---|
2811 | new_DIA(&exactLeadNumArray, DynArrayInitLen); |
---|
2812 | |
---|
2813 | DynamicByteArray *exactMidByteArray; |
---|
2814 | new_DBA(&exactMidByteArray, DynArrayInitLen); |
---|
2815 | |
---|
2816 | DynamicIntArray *resiBitArray; |
---|
2817 | new_DIA(&resiBitArray, DynArrayInitLen); |
---|
2818 | |
---|
2819 | unsigned char preDataBytes[8]; |
---|
2820 | longToBytes_bigEndian(preDataBytes, 0); |
---|
2821 | |
---|
2822 | int reqBytesLength = reqLength/8; |
---|
2823 | int resiBitsLength = reqLength%8; |
---|
2824 | |
---|
2825 | DoubleValueCompressElement *vce = (DoubleValueCompressElement*)malloc(sizeof(DoubleValueCompressElement)); |
---|
2826 | LossyCompressionElement *lce = (LossyCompressionElement*)malloc(sizeof(LossyCompressionElement)); |
---|
2827 | |
---|
2828 | size_t l; |
---|
2829 | for (l = 0; l < R1; l++) |
---|
2830 | { |
---|
2831 | |
---|
2832 | /////////////////////////// Process layer-s2 /////////////////////////// |
---|
2833 | /* Process Row-s3 data s4*/ |
---|
2834 | size_t gIndex; //global index |
---|
2835 | size_t lIndex; //local index |
---|
2836 | size_t index2D; //local 2D index |
---|
2837 | |
---|
2838 | gIndex = (s1+l)*r234+s2*r34+s3*r4+s4; |
---|
2839 | lIndex = l*R234; |
---|
2840 | index2D = 0; |
---|
2841 | |
---|
2842 | type[lIndex] = 0; |
---|
2843 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2844 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2845 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2846 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2847 | P1[index2D] = vce->data; |
---|
2848 | |
---|
2849 | /* Process Row-s3 data s4+1*/ |
---|
2850 | gIndex = (s1+l)*r234+s2*r34+s3*r4+s4+1; |
---|
2851 | lIndex = l*R234+1; |
---|
2852 | index2D = 1; |
---|
2853 | |
---|
2854 | pred1D = P1[index2D-1]; |
---|
2855 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2856 | |
---|
2857 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2858 | |
---|
2859 | if (itvNum < exe_params->intvCapacity) |
---|
2860 | { |
---|
2861 | if (diff < 0) itvNum = -itvNum; |
---|
2862 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2863 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2864 | } |
---|
2865 | else |
---|
2866 | { |
---|
2867 | type[lIndex] = 0; |
---|
2868 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2869 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2870 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2871 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2872 | P1[index2D] = vce->data; |
---|
2873 | } |
---|
2874 | |
---|
2875 | /* Process Row-s3 data s4+2 --> data e4 */ |
---|
2876 | for (j = 2; j < R4; j++) |
---|
2877 | { |
---|
2878 | gIndex = (s1+l)*r234+s2*r34+s3*r4+s4+j; |
---|
2879 | lIndex = l*R234+j; |
---|
2880 | index2D = j; |
---|
2881 | |
---|
2882 | pred1D = 2*P1[index2D-1] - P1[index2D-2]; |
---|
2883 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2884 | |
---|
2885 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2886 | |
---|
2887 | if (itvNum < exe_params->intvCapacity) |
---|
2888 | { |
---|
2889 | if (diff < 0) itvNum = -itvNum; |
---|
2890 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2891 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2892 | } |
---|
2893 | else |
---|
2894 | { |
---|
2895 | type[lIndex] = 0; |
---|
2896 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2897 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2898 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2899 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2900 | P1[index2D] = vce->data; |
---|
2901 | } |
---|
2902 | } |
---|
2903 | |
---|
2904 | /* Process Row-s3+1 --> Row-e3 */ |
---|
2905 | for (i = 1; i < R3; i++) |
---|
2906 | { |
---|
2907 | /* Process row-s2+i data s3 */ |
---|
2908 | gIndex = (s1+l)*r234+s2*r34+(s3+i)*r4+s4; |
---|
2909 | lIndex = l*R234+i*R4; |
---|
2910 | index2D = i*R4; |
---|
2911 | |
---|
2912 | pred1D = P1[index2D-R4]; |
---|
2913 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2914 | |
---|
2915 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2916 | |
---|
2917 | if (itvNum < exe_params->intvCapacity) |
---|
2918 | { |
---|
2919 | if (diff < 0) itvNum = -itvNum; |
---|
2920 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2921 | P1[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2922 | } |
---|
2923 | else |
---|
2924 | { |
---|
2925 | type[lIndex] = 0; |
---|
2926 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2927 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2928 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2929 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2930 | P1[index2D] = vce->data; |
---|
2931 | } |
---|
2932 | |
---|
2933 | /* Process row-s3+i data s4+1 --> data e4*/ |
---|
2934 | for (j = 1; j < R4; j++) |
---|
2935 | { |
---|
2936 | gIndex = (s1+l)*r234+s2*r34+(s3+i)*r4+s4+j; |
---|
2937 | lIndex = l*R234+i*R4+j; |
---|
2938 | index2D = i*R4+j; |
---|
2939 | |
---|
2940 | pred2D = P1[index2D-1] + P1[index2D-R4] - P1[index2D-R4-1]; |
---|
2941 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
2942 | |
---|
2943 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2944 | |
---|
2945 | if (itvNum < exe_params->intvCapacity) |
---|
2946 | { |
---|
2947 | if (diff < 0) itvNum = -itvNum; |
---|
2948 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2949 | P1[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2950 | } |
---|
2951 | else |
---|
2952 | { |
---|
2953 | type[lIndex] = 0; |
---|
2954 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2955 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2956 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2957 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2958 | P1[index2D] = vce->data; |
---|
2959 | } |
---|
2960 | } |
---|
2961 | } |
---|
2962 | |
---|
2963 | |
---|
2964 | /////////////////////////// Process layer-s2+1 --> layer-e2 /////////////////////////// |
---|
2965 | |
---|
2966 | for (k = 1; k < R2; k++) |
---|
2967 | { |
---|
2968 | /* Process Row-s3 data s4*/ |
---|
2969 | gIndex = (s1+l)*r234+(s2+k)*r34+s3*r4+s4; |
---|
2970 | lIndex = l*R234+k*R34; |
---|
2971 | index2D = 0; |
---|
2972 | |
---|
2973 | pred1D = P1[index2D]; |
---|
2974 | diff = spaceFillingValue[gIndex] - pred1D; |
---|
2975 | |
---|
2976 | itvNum = fabs(diff)/realPrecision + 1; |
---|
2977 | |
---|
2978 | if (itvNum < exe_params->intvCapacity) |
---|
2979 | { |
---|
2980 | if (diff < 0) itvNum = -itvNum; |
---|
2981 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
2982 | P0[index2D] = pred1D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
2983 | } |
---|
2984 | else |
---|
2985 | { |
---|
2986 | type[lIndex] = 0; |
---|
2987 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
2988 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
2989 | memcpy(preDataBytes,vce->curBytes,8); |
---|
2990 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
2991 | P0[index2D] = vce->data; |
---|
2992 | } |
---|
2993 | |
---|
2994 | |
---|
2995 | /* Process Row-s3 data s4+1 --> data e4 */ |
---|
2996 | for (j = 1; j < R4; j++) |
---|
2997 | { |
---|
2998 | gIndex = (s1+l)*r234+(s2+k)*r34+s3*r4+s4+j; |
---|
2999 | lIndex = l*R234+k*R34+j; |
---|
3000 | index2D = j; |
---|
3001 | |
---|
3002 | pred2D = P0[index2D-1] + P1[index2D] - P1[index2D-1]; |
---|
3003 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
3004 | |
---|
3005 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3006 | |
---|
3007 | if (itvNum < exe_params->intvCapacity) |
---|
3008 | { |
---|
3009 | if (diff < 0) itvNum = -itvNum; |
---|
3010 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
3011 | P0[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
3012 | } |
---|
3013 | else |
---|
3014 | { |
---|
3015 | type[lIndex] = 0; |
---|
3016 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
3017 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
3018 | memcpy(preDataBytes,vce->curBytes,8); |
---|
3019 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
3020 | P0[index2D] = vce->data; |
---|
3021 | } |
---|
3022 | } |
---|
3023 | |
---|
3024 | /* Process Row-s3+1 --> Row-e3 */ |
---|
3025 | for (i = 1; i < R3; i++) |
---|
3026 | { |
---|
3027 | /* Process Row-s3+i data s4 */ |
---|
3028 | gIndex = (s1+l)*r234+(s2+k)*r34+(s3+i)*r4+s4; |
---|
3029 | lIndex = l*R234+k*R34+i*R4; |
---|
3030 | index2D = i*R4; |
---|
3031 | |
---|
3032 | pred2D = P0[index2D-R4] + P1[index2D] - P1[index2D-R4]; |
---|
3033 | diff = spaceFillingValue[gIndex] - pred2D; |
---|
3034 | |
---|
3035 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3036 | |
---|
3037 | if (itvNum < exe_params->intvCapacity) |
---|
3038 | { |
---|
3039 | if (diff < 0) itvNum = -itvNum; |
---|
3040 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
3041 | P0[index2D] = pred2D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
3042 | } |
---|
3043 | else |
---|
3044 | { |
---|
3045 | type[lIndex] = 0; |
---|
3046 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
3047 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
3048 | memcpy(preDataBytes,vce->curBytes,8); |
---|
3049 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
3050 | P0[index2D] = vce->data; |
---|
3051 | } |
---|
3052 | |
---|
3053 | /* Process Row-s3+i data s4+1 --> data e4 */ |
---|
3054 | for (j = 1; j < R4; j++) |
---|
3055 | { |
---|
3056 | gIndex = (s1+l)*r234+(s2+k)*r34+(s3+i)*r4+s4+j; |
---|
3057 | lIndex = l*R234+k*R34+i*R4+j; |
---|
3058 | index2D = i*R4+j; |
---|
3059 | |
---|
3060 | // printf ("global index = %d, local index = %d\n", gIndex, lIndex); |
---|
3061 | |
---|
3062 | pred3D = P0[index2D-1] + P0[index2D-R4]+ P1[index2D] - P0[index2D-R4-1] - P1[index2D-R4] - P1[index2D-1] + P1[index2D-R4-1]; |
---|
3063 | diff = spaceFillingValue[gIndex] - pred3D; |
---|
3064 | |
---|
3065 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3066 | |
---|
3067 | if (itvNum < exe_params->intvCapacity) |
---|
3068 | { |
---|
3069 | if (diff < 0) itvNum = -itvNum; |
---|
3070 | type[lIndex] = (int) (itvNum/2) + exe_params->intvRadius; |
---|
3071 | P0[index2D] = pred3D + 2 * (type[lIndex] - exe_params->intvRadius) * realPrecision; |
---|
3072 | } |
---|
3073 | else |
---|
3074 | { |
---|
3075 | type[lIndex] = 0; |
---|
3076 | compressSingleDoubleValue(vce, spaceFillingValue[gIndex], realPrecision, medianValue, reqLength, reqBytesLength, resiBitsLength); |
---|
3077 | updateLossyCompElement_Double(vce->curBytes, preDataBytes, reqBytesLength, resiBitsLength, lce); |
---|
3078 | memcpy(preDataBytes,vce->curBytes,8); |
---|
3079 | addExactData(exactMidByteArray, exactLeadNumArray, resiBitArray, lce); |
---|
3080 | P0[index2D] = vce->data; |
---|
3081 | } |
---|
3082 | } |
---|
3083 | } |
---|
3084 | |
---|
3085 | double *Pt; |
---|
3086 | Pt = P1; |
---|
3087 | P1 = P0; |
---|
3088 | P0 = Pt; |
---|
3089 | } |
---|
3090 | } |
---|
3091 | |
---|
3092 | free(P0); |
---|
3093 | free(P1); |
---|
3094 | size_t exactDataNum = exactLeadNumArray->size; |
---|
3095 | |
---|
3096 | TightDataPointStorageD* tdps; |
---|
3097 | |
---|
3098 | new_TightDataPointStorageD(&tdps, dataLength, exactDataNum, |
---|
3099 | type, exactMidByteArray->array, exactMidByteArray->size, |
---|
3100 | exactLeadNumArray->array, |
---|
3101 | resiBitArray->array, resiBitArray->size, |
---|
3102 | resiBitsLength, |
---|
3103 | realPrecision, medianValue, (char)reqLength, quantization_intervals, NULL, 0, 0); |
---|
3104 | |
---|
3105 | //free memory |
---|
3106 | free_DIA(exactLeadNumArray); |
---|
3107 | free_DIA(resiBitArray); |
---|
3108 | free(type); |
---|
3109 | free(vce); |
---|
3110 | free(lce); |
---|
3111 | free(exactMidByteArray); //exactMidByteArray->array has been released in free_TightDataPointStorageF(tdps); |
---|
3112 | |
---|
3113 | return tdps; |
---|
3114 | } |
---|
3115 | |
---|
3116 | /** |
---|
3117 | * |
---|
3118 | * This is a fast implementation for optimize_intervals_double_3D() |
---|
3119 | * */ |
---|
3120 | unsigned int optimize_intervals_double_3D_opt(double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision){ |
---|
3121 | size_t i; |
---|
3122 | size_t radiusIndex; |
---|
3123 | size_t r23=r2*r3; |
---|
3124 | double pred_value = 0, pred_err; |
---|
3125 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3126 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3127 | size_t totalSampleSize = 0; |
---|
3128 | |
---|
3129 | size_t offset_count = confparams_cpr->sampleDistance - 2; // count r3 offset |
---|
3130 | size_t offset_count_2; |
---|
3131 | double * data_pos = oriData + r23 + r3 + offset_count; |
---|
3132 | size_t n1_count = 1, n2_count = 1; // count i,j sum |
---|
3133 | size_t len = r1 * r2 * r3; |
---|
3134 | while(data_pos - oriData < len){ |
---|
3135 | totalSampleSize++; |
---|
3136 | pred_value = data_pos[-1] + data_pos[-r3] + data_pos[-r23] - data_pos[-1-r23] - data_pos[-r3-1] - data_pos[-r3-r23] + data_pos[-r3-r23-1]; |
---|
3137 | pred_err = fabs(pred_value - *data_pos); |
---|
3138 | radiusIndex = (pred_err/realPrecision+1)/2; |
---|
3139 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
3140 | { |
---|
3141 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
3142 | } |
---|
3143 | intervals[radiusIndex]++; |
---|
3144 | offset_count += confparams_cpr->sampleDistance; |
---|
3145 | if(offset_count >= r3){ |
---|
3146 | n2_count ++; |
---|
3147 | if(n2_count == r2){ |
---|
3148 | n1_count ++; |
---|
3149 | n2_count = 1; |
---|
3150 | data_pos += r3; |
---|
3151 | } |
---|
3152 | offset_count_2 = (n1_count + n2_count) % confparams_cpr->sampleDistance; |
---|
3153 | data_pos += (r3 + confparams_cpr->sampleDistance - offset_count) + (confparams_cpr->sampleDistance - offset_count_2); |
---|
3154 | offset_count = (confparams_cpr->sampleDistance - offset_count_2); |
---|
3155 | if(offset_count == 0) offset_count ++; |
---|
3156 | } |
---|
3157 | else data_pos += confparams_cpr->sampleDistance; |
---|
3158 | } |
---|
3159 | //compute the appropriate number |
---|
3160 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
3161 | size_t sum = 0; |
---|
3162 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
3163 | { |
---|
3164 | sum += intervals[i]; |
---|
3165 | if(sum>targetCount) |
---|
3166 | break; |
---|
3167 | } |
---|
3168 | if(i>=confparams_cpr->maxRangeRadius) |
---|
3169 | i = confparams_cpr->maxRangeRadius-1; |
---|
3170 | unsigned int accIntervals = 2*(i+1); |
---|
3171 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
3172 | |
---|
3173 | if(powerOf2<32) |
---|
3174 | powerOf2 = 32; |
---|
3175 | free(intervals); |
---|
3176 | return powerOf2; |
---|
3177 | } |
---|
3178 | |
---|
3179 | unsigned int optimize_intervals_double_2D_opt(double *oriData, size_t r1, size_t r2, double realPrecision) |
---|
3180 | { |
---|
3181 | size_t i; |
---|
3182 | size_t radiusIndex; |
---|
3183 | double pred_value = 0, pred_err; |
---|
3184 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3185 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3186 | size_t totalSampleSize = 0; |
---|
3187 | |
---|
3188 | size_t offset_count = confparams_cpr->sampleDistance - 1; // count r2 offset |
---|
3189 | size_t offset_count_2; |
---|
3190 | double * data_pos = oriData + r2 + offset_count; |
---|
3191 | size_t n1_count = 1; // count i sum |
---|
3192 | size_t len = r1 * r2; |
---|
3193 | while(data_pos - oriData < len){ |
---|
3194 | totalSampleSize++; |
---|
3195 | pred_value = data_pos[-1] + data_pos[-r2] - data_pos[-r2-1]; |
---|
3196 | pred_err = fabs(pred_value - *data_pos); |
---|
3197 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
3198 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
3199 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
3200 | intervals[radiusIndex]++; |
---|
3201 | |
---|
3202 | offset_count += confparams_cpr->sampleDistance; |
---|
3203 | if(offset_count >= r2){ |
---|
3204 | n1_count ++; |
---|
3205 | offset_count_2 = n1_count % confparams_cpr->sampleDistance; |
---|
3206 | data_pos += (r2 + confparams_cpr->sampleDistance - offset_count) + (confparams_cpr->sampleDistance - offset_count_2); |
---|
3207 | offset_count = (confparams_cpr->sampleDistance - offset_count_2); |
---|
3208 | if(offset_count == 0) offset_count ++; |
---|
3209 | } |
---|
3210 | else data_pos += confparams_cpr->sampleDistance; |
---|
3211 | } |
---|
3212 | |
---|
3213 | //compute the appropriate number |
---|
3214 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
3215 | size_t sum = 0; |
---|
3216 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
3217 | { |
---|
3218 | sum += intervals[i]; |
---|
3219 | if(sum>targetCount) |
---|
3220 | break; |
---|
3221 | } |
---|
3222 | if(i>=confparams_cpr->maxRangeRadius) |
---|
3223 | i = confparams_cpr->maxRangeRadius-1; |
---|
3224 | unsigned int accIntervals = 2*(i+1); |
---|
3225 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
3226 | |
---|
3227 | if(powerOf2<32) |
---|
3228 | powerOf2 = 32; |
---|
3229 | |
---|
3230 | free(intervals); |
---|
3231 | return powerOf2; |
---|
3232 | } |
---|
3233 | |
---|
3234 | unsigned int optimize_intervals_double_1D_opt(double *oriData, size_t dataLength, double realPrecision) |
---|
3235 | { |
---|
3236 | size_t i = 0, radiusIndex; |
---|
3237 | double pred_value = 0, pred_err; |
---|
3238 | size_t *intervals = (size_t*)malloc(confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3239 | memset(intervals, 0, confparams_cpr->maxRangeRadius*sizeof(size_t)); |
---|
3240 | size_t totalSampleSize = 0; |
---|
3241 | |
---|
3242 | double * data_pos = oriData + 2; |
---|
3243 | while(data_pos - oriData < dataLength){ |
---|
3244 | totalSampleSize++; |
---|
3245 | pred_value = data_pos[-1]; |
---|
3246 | pred_err = fabs(pred_value - *data_pos); |
---|
3247 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
3248 | if(radiusIndex>=confparams_cpr->maxRangeRadius) |
---|
3249 | radiusIndex = confparams_cpr->maxRangeRadius - 1; |
---|
3250 | intervals[radiusIndex]++; |
---|
3251 | |
---|
3252 | data_pos += confparams_cpr->sampleDistance; |
---|
3253 | } |
---|
3254 | //compute the appropriate number |
---|
3255 | size_t targetCount = totalSampleSize*confparams_cpr->predThreshold; |
---|
3256 | size_t sum = 0; |
---|
3257 | for(i=0;i<confparams_cpr->maxRangeRadius;i++) |
---|
3258 | { |
---|
3259 | sum += intervals[i]; |
---|
3260 | if(sum>targetCount) |
---|
3261 | break; |
---|
3262 | } |
---|
3263 | if(i>=confparams_cpr->maxRangeRadius) |
---|
3264 | i = confparams_cpr->maxRangeRadius-1; |
---|
3265 | |
---|
3266 | unsigned int accIntervals = 2*(i+1); |
---|
3267 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
3268 | |
---|
3269 | if(powerOf2<32) |
---|
3270 | powerOf2 = 32; |
---|
3271 | |
---|
3272 | free(intervals); |
---|
3273 | return powerOf2; |
---|
3274 | } |
---|
3275 | |
---|
3276 | /*The above code is for sz 1.4.13; the following code is for sz 2.0*/ |
---|
3277 | unsigned int optimize_intervals_double_2D_with_freq_and_dense_pos(double *oriData, size_t r1, size_t r2, double realPrecision, double * dense_pos, double * max_freq, double * mean_freq) |
---|
3278 | { |
---|
3279 | double mean = 0.0; |
---|
3280 | size_t len = r1 * r2; |
---|
3281 | size_t mean_distance = (int) (sqrt(len)); |
---|
3282 | |
---|
3283 | double * data_pos = oriData; |
---|
3284 | size_t mean_count = 0; |
---|
3285 | while(data_pos - oriData < len){ |
---|
3286 | mean += *data_pos; |
---|
3287 | mean_count ++; |
---|
3288 | data_pos += mean_distance; |
---|
3289 | } |
---|
3290 | if(mean_count > 0) mean /= mean_count; |
---|
3291 | size_t range = 8192; |
---|
3292 | size_t radius = 4096; |
---|
3293 | size_t * freq_intervals = (size_t *) malloc(range*sizeof(size_t)); |
---|
3294 | memset(freq_intervals, 0, range*sizeof(size_t)); |
---|
3295 | |
---|
3296 | unsigned int maxRangeRadius = confparams_cpr->maxRangeRadius; |
---|
3297 | int sampleDistance = confparams_cpr->sampleDistance; |
---|
3298 | double predThreshold = confparams_cpr->predThreshold; |
---|
3299 | |
---|
3300 | size_t i; |
---|
3301 | size_t radiusIndex; |
---|
3302 | double pred_value = 0, pred_err; |
---|
3303 | size_t *intervals = (size_t*)malloc(maxRangeRadius*sizeof(size_t)); |
---|
3304 | memset(intervals, 0, maxRangeRadius*sizeof(size_t)); |
---|
3305 | |
---|
3306 | double mean_diff; |
---|
3307 | ptrdiff_t freq_index; |
---|
3308 | size_t freq_count = 0; |
---|
3309 | size_t n1_count = 1; |
---|
3310 | size_t offset_count = sampleDistance - 1; |
---|
3311 | size_t offset_count_2 = 0; |
---|
3312 | size_t sample_count = 0; |
---|
3313 | data_pos = oriData + r2 + offset_count; |
---|
3314 | while(data_pos - oriData < len){ |
---|
3315 | pred_value = data_pos[-1] + data_pos[-r2] - data_pos[-r2-1]; |
---|
3316 | pred_err = fabs(pred_value - *data_pos); |
---|
3317 | if(pred_err < realPrecision) freq_count ++; |
---|
3318 | radiusIndex = (unsigned long)((pred_err/realPrecision+1)/2); |
---|
3319 | if(radiusIndex>=maxRangeRadius) |
---|
3320 | radiusIndex = maxRangeRadius - 1; |
---|
3321 | intervals[radiusIndex]++; |
---|
3322 | |
---|
3323 | mean_diff = *data_pos - mean; |
---|
3324 | if(mean_diff > 0) freq_index = (ptrdiff_t)(mean_diff/realPrecision) + radius; |
---|
3325 | else freq_index = (ptrdiff_t)(mean_diff/realPrecision) - 1 + radius; |
---|
3326 | if(freq_index <= 0){ |
---|
3327 | freq_intervals[0] ++; |
---|
3328 | } |
---|
3329 | else if(freq_index >= range){ |
---|
3330 | freq_intervals[range - 1] ++; |
---|
3331 | } |
---|
3332 | else{ |
---|
3333 | freq_intervals[freq_index] ++; |
---|
3334 | } |
---|
3335 | offset_count += sampleDistance; |
---|
3336 | if(offset_count >= r2){ |
---|
3337 | n1_count ++; |
---|
3338 | offset_count_2 = n1_count % sampleDistance; |
---|
3339 | data_pos += (r2 + sampleDistance - offset_count) + (sampleDistance - offset_count_2); |
---|
3340 | offset_count = (sampleDistance - offset_count_2); |
---|
3341 | if(offset_count == 0) offset_count ++; |
---|
3342 | } |
---|
3343 | else data_pos += sampleDistance; |
---|
3344 | sample_count ++; |
---|
3345 | } |
---|
3346 | *max_freq = freq_count * 1.0/ sample_count; |
---|
3347 | |
---|
3348 | //compute the appropriate number |
---|
3349 | size_t targetCount = sample_count*predThreshold; |
---|
3350 | size_t sum = 0; |
---|
3351 | for(i=0;i<maxRangeRadius;i++) |
---|
3352 | { |
---|
3353 | sum += intervals[i]; |
---|
3354 | if(sum>targetCount) |
---|
3355 | break; |
---|
3356 | } |
---|
3357 | if(i>=maxRangeRadius) |
---|
3358 | i = maxRangeRadius-1; |
---|
3359 | unsigned int accIntervals = 2*(i+1); |
---|
3360 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
3361 | |
---|
3362 | if(powerOf2<32) |
---|
3363 | powerOf2 = 32; |
---|
3364 | |
---|
3365 | // collect frequency |
---|
3366 | size_t max_sum = 0; |
---|
3367 | size_t max_index = 0; |
---|
3368 | size_t tmp_sum; |
---|
3369 | size_t * freq_pos = freq_intervals + 1; |
---|
3370 | for(size_t i=1; i<range-2; i++){ |
---|
3371 | tmp_sum = freq_pos[0] + freq_pos[1]; |
---|
3372 | if(tmp_sum > max_sum){ |
---|
3373 | max_sum = tmp_sum; |
---|
3374 | max_index = i; |
---|
3375 | } |
---|
3376 | freq_pos ++; |
---|
3377 | } |
---|
3378 | *dense_pos = mean + realPrecision * (ptrdiff_t)(max_index + 1 - radius); |
---|
3379 | *mean_freq = max_sum * 1.0 / sample_count; |
---|
3380 | |
---|
3381 | free(freq_intervals); |
---|
3382 | free(intervals); |
---|
3383 | return powerOf2; |
---|
3384 | } |
---|
3385 | |
---|
3386 | unsigned int optimize_intervals_double_3D_with_freq_and_dense_pos(double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision, double * dense_pos, double * max_freq, double * mean_freq) |
---|
3387 | { |
---|
3388 | double mean = 0.0; |
---|
3389 | size_t len = r1 * r2 * r3; |
---|
3390 | size_t mean_distance = (int) (sqrt(len)); |
---|
3391 | double * data_pos = oriData; |
---|
3392 | size_t offset_count = 0; |
---|
3393 | size_t offset_count_2 = 0; |
---|
3394 | size_t mean_count = 0; |
---|
3395 | while(data_pos - oriData < len){ |
---|
3396 | mean += *data_pos; |
---|
3397 | mean_count ++; |
---|
3398 | data_pos += mean_distance; |
---|
3399 | offset_count += mean_distance; |
---|
3400 | offset_count_2 += mean_distance; |
---|
3401 | if(offset_count >= r3){ |
---|
3402 | offset_count = 0; |
---|
3403 | data_pos -= 1; |
---|
3404 | } |
---|
3405 | if(offset_count_2 >= r2 * r3){ |
---|
3406 | offset_count_2 = 0; |
---|
3407 | data_pos -= 1; |
---|
3408 | } |
---|
3409 | } |
---|
3410 | if(mean_count > 0) mean /= mean_count; |
---|
3411 | size_t range = 8192; |
---|
3412 | size_t radius = 4096; |
---|
3413 | size_t * freq_intervals = (size_t *) malloc(range*sizeof(size_t)); |
---|
3414 | memset(freq_intervals, 0, range*sizeof(size_t)); |
---|
3415 | |
---|
3416 | unsigned int maxRangeRadius = confparams_cpr->maxRangeRadius; |
---|
3417 | int sampleDistance = confparams_cpr->sampleDistance; |
---|
3418 | double predThreshold = confparams_cpr->predThreshold; |
---|
3419 | |
---|
3420 | size_t i; |
---|
3421 | size_t radiusIndex; |
---|
3422 | size_t r23=r2*r3; |
---|
3423 | double pred_value = 0, pred_err; |
---|
3424 | size_t *intervals = (size_t*)malloc(maxRangeRadius*sizeof(size_t)); |
---|
3425 | memset(intervals, 0, maxRangeRadius*sizeof(size_t)); |
---|
3426 | |
---|
3427 | double mean_diff; |
---|
3428 | ptrdiff_t freq_index; |
---|
3429 | size_t freq_count = 0; |
---|
3430 | size_t sample_count = 0; |
---|
3431 | |
---|
3432 | offset_count = confparams_cpr->sampleDistance - 2; // count r3 offset |
---|
3433 | data_pos = oriData + r23 + r3 + offset_count; |
---|
3434 | size_t n1_count = 1, n2_count = 1; // count i,j sum |
---|
3435 | |
---|
3436 | while(data_pos - oriData < len){ |
---|
3437 | |
---|
3438 | pred_value = data_pos[-1] + data_pos[-r3] + data_pos[-r23] - data_pos[-1-r23] - data_pos[-r3-1] - data_pos[-r3-r23] + data_pos[-r3-r23-1]; |
---|
3439 | pred_err = fabs(pred_value - *data_pos); |
---|
3440 | if(pred_err < realPrecision) freq_count ++; |
---|
3441 | radiusIndex = (pred_err/realPrecision+1)/2; |
---|
3442 | if(radiusIndex>=maxRangeRadius) |
---|
3443 | { |
---|
3444 | radiusIndex = maxRangeRadius - 1; |
---|
3445 | } |
---|
3446 | intervals[radiusIndex]++; |
---|
3447 | |
---|
3448 | mean_diff = *data_pos - mean; |
---|
3449 | if(mean_diff > 0) freq_index = (ptrdiff_t)(mean_diff/realPrecision) + radius; |
---|
3450 | else freq_index = (ptrdiff_t)(mean_diff/realPrecision) - 1 + radius; |
---|
3451 | if(freq_index <= 0){ |
---|
3452 | freq_intervals[0] ++; |
---|
3453 | } |
---|
3454 | else if(freq_index >= range){ |
---|
3455 | freq_intervals[range - 1] ++; |
---|
3456 | } |
---|
3457 | else{ |
---|
3458 | freq_intervals[freq_index] ++; |
---|
3459 | } |
---|
3460 | offset_count += sampleDistance; |
---|
3461 | if(offset_count >= r3){ |
---|
3462 | n2_count ++; |
---|
3463 | if(n2_count == r2){ |
---|
3464 | n1_count ++; |
---|
3465 | n2_count = 1; |
---|
3466 | data_pos += r3; |
---|
3467 | } |
---|
3468 | offset_count_2 = (n1_count + n2_count) % sampleDistance; |
---|
3469 | data_pos += (r3 + sampleDistance - offset_count) + (sampleDistance - offset_count_2); |
---|
3470 | offset_count = (sampleDistance - offset_count_2); |
---|
3471 | if(offset_count == 0) offset_count ++; |
---|
3472 | } |
---|
3473 | else data_pos += sampleDistance; |
---|
3474 | sample_count ++; |
---|
3475 | } |
---|
3476 | *max_freq = freq_count * 1.0/ sample_count; |
---|
3477 | |
---|
3478 | //compute the appropriate number |
---|
3479 | size_t targetCount = sample_count*predThreshold; |
---|
3480 | size_t sum = 0; |
---|
3481 | for(i=0;i<maxRangeRadius;i++) |
---|
3482 | { |
---|
3483 | sum += intervals[i]; |
---|
3484 | if(sum>targetCount) |
---|
3485 | break; |
---|
3486 | } |
---|
3487 | if(i>=maxRangeRadius) |
---|
3488 | i = maxRangeRadius-1; |
---|
3489 | unsigned int accIntervals = 2*(i+1); |
---|
3490 | unsigned int powerOf2 = roundUpToPowerOf2(accIntervals); |
---|
3491 | |
---|
3492 | if(powerOf2<32) |
---|
3493 | powerOf2 = 32; |
---|
3494 | // collect frequency |
---|
3495 | size_t max_sum = 0; |
---|
3496 | size_t max_index = 0; |
---|
3497 | size_t tmp_sum; |
---|
3498 | size_t * freq_pos = freq_intervals + 1; |
---|
3499 | for(size_t i=1; i<range-2; i++){ |
---|
3500 | tmp_sum = freq_pos[0] + freq_pos[1]; |
---|
3501 | if(tmp_sum > max_sum){ |
---|
3502 | max_sum = tmp_sum; |
---|
3503 | max_index = i; |
---|
3504 | } |
---|
3505 | freq_pos ++; |
---|
3506 | } |
---|
3507 | *dense_pos = mean + realPrecision * (ptrdiff_t)(max_index + 1 - radius); |
---|
3508 | *mean_freq = max_sum * 1.0 / sample_count; |
---|
3509 | |
---|
3510 | free(freq_intervals); |
---|
3511 | free(intervals); |
---|
3512 | return powerOf2; |
---|
3513 | } |
---|
3514 | |
---|
3515 | #define MIN(a, b) a<b? a : b |
---|
3516 | unsigned char * SZ_compress_double_2D_MDQ_nonblocked_with_blocked_regression(double *oriData, size_t r1, size_t r2, double realPrecision, size_t * comp_size){ |
---|
3517 | |
---|
3518 | unsigned int quantization_intervals; |
---|
3519 | double sz_sample_correct_freq = -1;//0.5; //-1 |
---|
3520 | double dense_pos; |
---|
3521 | double mean_flush_freq; |
---|
3522 | unsigned char use_mean = 0; |
---|
3523 | |
---|
3524 | if(exe_params->optQuantMode==1) |
---|
3525 | { |
---|
3526 | quantization_intervals = optimize_intervals_double_2D_with_freq_and_dense_pos(oriData, r1, r2, realPrecision, &dense_pos, &sz_sample_correct_freq, &mean_flush_freq); |
---|
3527 | if(mean_flush_freq > 0.5 || mean_flush_freq > sz_sample_correct_freq) use_mean = 1; |
---|
3528 | updateQuantizationInfo(quantization_intervals); |
---|
3529 | } |
---|
3530 | else{ |
---|
3531 | quantization_intervals = exe_params->intvCapacity; |
---|
3532 | } |
---|
3533 | |
---|
3534 | // calculate block dims |
---|
3535 | size_t num_x, num_y; |
---|
3536 | size_t block_size = 16; |
---|
3537 | |
---|
3538 | SZ_COMPUTE_2D_NUMBER_OF_BLOCKS(r1, num_x, block_size); |
---|
3539 | SZ_COMPUTE_2D_NUMBER_OF_BLOCKS(r2, num_y, block_size); |
---|
3540 | |
---|
3541 | size_t split_index_x, split_index_y; |
---|
3542 | size_t early_blockcount_x, early_blockcount_y; |
---|
3543 | size_t late_blockcount_x, late_blockcount_y; |
---|
3544 | SZ_COMPUTE_BLOCKCOUNT(r1, num_x, split_index_x, early_blockcount_x, late_blockcount_x); |
---|
3545 | SZ_COMPUTE_BLOCKCOUNT(r2, num_y, split_index_y, early_blockcount_y, late_blockcount_y); |
---|
3546 | |
---|
3547 | size_t max_num_block_elements = early_blockcount_x * early_blockcount_y; |
---|
3548 | size_t num_blocks = num_x * num_y; |
---|
3549 | size_t num_elements = r1 * r2; |
---|
3550 | |
---|
3551 | size_t dim0_offset = r2; |
---|
3552 | |
---|
3553 | int * result_type = (int *) malloc(num_elements * sizeof(int)); |
---|
3554 | size_t unpred_data_max_size = max_num_block_elements; |
---|
3555 | double * result_unpredictable_data = (double *) malloc(unpred_data_max_size * sizeof(double) * num_blocks); |
---|
3556 | size_t total_unpred = 0; |
---|
3557 | size_t unpredictable_count; |
---|
3558 | double * data_pos = oriData; |
---|
3559 | int * type = result_type; |
---|
3560 | size_t offset_x, offset_y; |
---|
3561 | size_t current_blockcount_x, current_blockcount_y; |
---|
3562 | |
---|
3563 | double * reg_params = (double *) malloc(num_blocks * 4 * sizeof(double)); |
---|
3564 | double * reg_params_pos = reg_params; |
---|
3565 | // move regression part out |
---|
3566 | size_t params_offset_b = num_blocks; |
---|
3567 | size_t params_offset_c = 2*num_blocks; |
---|
3568 | for(size_t i=0; i<num_x; i++){ |
---|
3569 | for(size_t j=0; j<num_y; j++){ |
---|
3570 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
3571 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
3572 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
3573 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
3574 | |
---|
3575 | data_pos = oriData + offset_x * dim0_offset + offset_y; |
---|
3576 | |
---|
3577 | { |
---|
3578 | double * cur_data_pos = data_pos; |
---|
3579 | double fx = 0.0; |
---|
3580 | double fy = 0.0; |
---|
3581 | double f = 0; |
---|
3582 | double sum_x; |
---|
3583 | double curData; |
---|
3584 | for(size_t i=0; i<current_blockcount_x; i++){ |
---|
3585 | sum_x = 0; |
---|
3586 | for(size_t j=0; j<current_blockcount_y; j++){ |
---|
3587 | curData = *cur_data_pos; |
---|
3588 | sum_x += curData; |
---|
3589 | fy += curData * j; |
---|
3590 | cur_data_pos ++; |
---|
3591 | } |
---|
3592 | fx += sum_x * i; |
---|
3593 | f += sum_x; |
---|
3594 | cur_data_pos += dim0_offset - current_blockcount_y; |
---|
3595 | } |
---|
3596 | double coeff = 1.0 / (current_blockcount_x * current_blockcount_y); |
---|
3597 | reg_params_pos[0] = (2 * fx / (current_blockcount_x - 1) - f) * 6 * coeff / (current_blockcount_x + 1); |
---|
3598 | reg_params_pos[params_offset_b] = (2 * fy / (current_blockcount_y - 1) - f) * 6 * coeff / (current_blockcount_y + 1); |
---|
3599 | reg_params_pos[params_offset_c] = f * coeff - ((current_blockcount_x - 1) * reg_params_pos[0] / 2 + (current_blockcount_y - 1) * reg_params_pos[params_offset_b] / 2); |
---|
3600 | } |
---|
3601 | |
---|
3602 | reg_params_pos ++; |
---|
3603 | } |
---|
3604 | } |
---|
3605 | |
---|
3606 | //Compress coefficient arrays |
---|
3607 | double precision_a, precision_b, precision_c; |
---|
3608 | double rel_param_err = 0.15/3; |
---|
3609 | precision_a = rel_param_err * realPrecision / late_blockcount_x; |
---|
3610 | precision_b = rel_param_err * realPrecision / late_blockcount_y; |
---|
3611 | precision_c = rel_param_err * realPrecision; |
---|
3612 | |
---|
3613 | double mean = 0; |
---|
3614 | use_mean = 0; |
---|
3615 | if(use_mean){ |
---|
3616 | // compute mean |
---|
3617 | double sum = 0.0; |
---|
3618 | size_t mean_count = 0; |
---|
3619 | for(size_t i=0; i<num_elements; i++){ |
---|
3620 | if(fabs(oriData[i] - dense_pos) < realPrecision){ |
---|
3621 | sum += oriData[i]; |
---|
3622 | mean_count ++; |
---|
3623 | } |
---|
3624 | } |
---|
3625 | if(mean_count > 0) mean = sum / mean_count; |
---|
3626 | } |
---|
3627 | |
---|
3628 | |
---|
3629 | double tmp_realPrecision = realPrecision; |
---|
3630 | |
---|
3631 | // use two prediction buffers for higher performance |
---|
3632 | double * unpredictable_data = result_unpredictable_data; |
---|
3633 | unsigned char * indicator = (unsigned char *) malloc(num_blocks * sizeof(unsigned char)); |
---|
3634 | memset(indicator, 0, num_blocks * sizeof(unsigned char)); |
---|
3635 | size_t reg_count = 0; |
---|
3636 | size_t strip_dim_0 = early_blockcount_x + 1; |
---|
3637 | size_t strip_dim_1 = r2 + 1; |
---|
3638 | size_t strip_dim0_offset = strip_dim_1; |
---|
3639 | unsigned char * indicator_pos = indicator; |
---|
3640 | size_t prediction_buffer_size = strip_dim_0 * strip_dim0_offset * sizeof(double); |
---|
3641 | double * prediction_buffer_1 = (double *) malloc(prediction_buffer_size); |
---|
3642 | memset(prediction_buffer_1, 0, prediction_buffer_size); |
---|
3643 | double * prediction_buffer_2 = (double *) malloc(prediction_buffer_size); |
---|
3644 | memset(prediction_buffer_2, 0, prediction_buffer_size); |
---|
3645 | double * cur_pb_buf = prediction_buffer_1; |
---|
3646 | double * next_pb_buf = prediction_buffer_2; |
---|
3647 | double * cur_pb_buf_pos; |
---|
3648 | double * next_pb_buf_pos; |
---|
3649 | int intvCapacity = exe_params->intvCapacity; |
---|
3650 | int intvRadius = exe_params->intvRadius; |
---|
3651 | int use_reg = 0; |
---|
3652 | |
---|
3653 | reg_params_pos = reg_params; |
---|
3654 | // compress the regression coefficients on the fly |
---|
3655 | double last_coeffcients[3] = {0.0}; |
---|
3656 | int coeff_intvCapacity_sz = 65536; |
---|
3657 | int coeff_intvRadius = coeff_intvCapacity_sz / 2; |
---|
3658 | int * coeff_type[3]; |
---|
3659 | int * coeff_result_type = (int *) malloc(num_blocks*3*sizeof(int)); |
---|
3660 | double * coeff_unpred_data[3]; |
---|
3661 | double * coeff_unpredictable_data = (double *) malloc(num_blocks*3*sizeof(double)); |
---|
3662 | double precision[3]; |
---|
3663 | precision[0] = precision_a, precision[1] = precision_b, precision[2] = precision_c; |
---|
3664 | for(int i=0; i<3; i++){ |
---|
3665 | coeff_type[i] = coeff_result_type + i * num_blocks; |
---|
3666 | coeff_unpred_data[i] = coeff_unpredictable_data + i * num_blocks; |
---|
3667 | } |
---|
3668 | int coeff_index = 0; |
---|
3669 | unsigned int coeff_unpredictable_count[3] = {0}; |
---|
3670 | if(use_mean){ |
---|
3671 | type = result_type; |
---|
3672 | int intvCapacity_sz = intvCapacity - 2; |
---|
3673 | for(size_t i=0; i<num_x; i++){ |
---|
3674 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
3675 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
3676 | data_pos = oriData + offset_x * dim0_offset; |
---|
3677 | |
---|
3678 | cur_pb_buf_pos = cur_pb_buf + strip_dim0_offset + 1; |
---|
3679 | next_pb_buf_pos = next_pb_buf + 1; |
---|
3680 | double * pb_pos = cur_pb_buf_pos; |
---|
3681 | double * next_pb_pos = next_pb_buf_pos; |
---|
3682 | |
---|
3683 | for(size_t j=0; j<num_y; j++){ |
---|
3684 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
3685 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
3686 | |
---|
3687 | /*sampling: decide which predictor to use (regression or lorenzo)*/ |
---|
3688 | { |
---|
3689 | double * cur_data_pos; |
---|
3690 | double curData; |
---|
3691 | double pred_reg, pred_sz; |
---|
3692 | double err_sz = 0.0, err_reg = 0.0; |
---|
3693 | // [1, 1] [3, 3] [5, 5] [7, 7] [9, 9] |
---|
3694 | // [1, 9] [3, 7] [7, 3] [9, 1] |
---|
3695 | int count = 0; |
---|
3696 | for(int i=1; i<current_blockcount_x; i+=2){ |
---|
3697 | cur_data_pos = data_pos + i * dim0_offset + i; |
---|
3698 | curData = *cur_data_pos; |
---|
3699 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim0_offset] - cur_data_pos[-dim0_offset - 1]; |
---|
3700 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c]; |
---|
3701 | |
---|
3702 | err_sz += MIN(fabs(pred_sz - curData) + realPrecision*0.81, fabs(mean - curData)); |
---|
3703 | |
---|
3704 | err_reg += fabs(pred_reg - curData); |
---|
3705 | |
---|
3706 | cur_data_pos = data_pos + i * dim0_offset + (block_size - i); |
---|
3707 | curData = *cur_data_pos; |
---|
3708 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim0_offset] - cur_data_pos[-dim0_offset - 1]; |
---|
3709 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * (block_size - i) + reg_params_pos[params_offset_c]; |
---|
3710 | err_sz += MIN(fabs(pred_sz - curData) + realPrecision*0.81, fabs(mean - curData)); |
---|
3711 | |
---|
3712 | err_reg += fabs(pred_reg - curData); |
---|
3713 | |
---|
3714 | count += 2; |
---|
3715 | } |
---|
3716 | |
---|
3717 | use_reg = (err_reg < err_sz); |
---|
3718 | } |
---|
3719 | if(use_reg) |
---|
3720 | { |
---|
3721 | { |
---|
3722 | /*predict coefficients in current block via previous reg_block*/ |
---|
3723 | double cur_coeff; |
---|
3724 | double diff, itvNum; |
---|
3725 | for(int e=0; e<3; e++){ |
---|
3726 | cur_coeff = reg_params_pos[e*num_blocks]; |
---|
3727 | diff = cur_coeff - last_coeffcients[e]; |
---|
3728 | itvNum = fabs(diff)/precision[e] + 1; |
---|
3729 | if (itvNum < coeff_intvCapacity_sz){ |
---|
3730 | if (diff < 0) itvNum = -itvNum; |
---|
3731 | coeff_type[e][coeff_index] = (int) (itvNum/2) + coeff_intvRadius; |
---|
3732 | last_coeffcients[e] = last_coeffcients[e] + 2 * (coeff_type[e][coeff_index] - coeff_intvRadius) * precision[e]; |
---|
3733 | //ganrantee comporession error against the case of machine-epsilon |
---|
3734 | if(fabs(cur_coeff - last_coeffcients[e])>precision[e]){ |
---|
3735 | coeff_type[e][coeff_index] = 0; |
---|
3736 | last_coeffcients[e] = cur_coeff; |
---|
3737 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
3738 | } |
---|
3739 | } |
---|
3740 | else{ |
---|
3741 | coeff_type[e][coeff_index] = 0; |
---|
3742 | last_coeffcients[e] = cur_coeff; |
---|
3743 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
3744 | } |
---|
3745 | } |
---|
3746 | coeff_index ++; |
---|
3747 | } |
---|
3748 | double curData; |
---|
3749 | double pred; |
---|
3750 | double itvNum; |
---|
3751 | double diff; |
---|
3752 | size_t index = 0; |
---|
3753 | size_t block_unpredictable_count = 0; |
---|
3754 | double * cur_data_pos = data_pos; |
---|
3755 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
3756 | for(size_t jj=0; jj<current_blockcount_y - 1; jj++){ |
---|
3757 | curData = *cur_data_pos; |
---|
3758 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
3759 | diff = curData - pred; |
---|
3760 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3761 | if (itvNum < intvCapacity){ |
---|
3762 | if (diff < 0) itvNum = -itvNum; |
---|
3763 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3764 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
3765 | //ganrantee comporession error against the case of machine-epsilon |
---|
3766 | if(fabs(curData - pred)>realPrecision){ |
---|
3767 | type[index] = 0; |
---|
3768 | pred = curData; |
---|
3769 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3770 | } |
---|
3771 | } |
---|
3772 | else{ |
---|
3773 | type[index] = 0; |
---|
3774 | pred = curData; |
---|
3775 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3776 | } |
---|
3777 | index ++; |
---|
3778 | cur_data_pos ++; |
---|
3779 | } |
---|
3780 | /*dealing with the last jj (boundary)*/ |
---|
3781 | { |
---|
3782 | size_t jj = current_blockcount_y - 1; |
---|
3783 | curData = *cur_data_pos; |
---|
3784 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
3785 | diff = curData - pred; |
---|
3786 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3787 | if (itvNum < intvCapacity){ |
---|
3788 | if (diff < 0) itvNum = -itvNum; |
---|
3789 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3790 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
3791 | //ganrantee comporession error against the case of machine-epsilon |
---|
3792 | if(fabs(curData - pred)>realPrecision){ |
---|
3793 | type[index] = 0; |
---|
3794 | pred = curData; |
---|
3795 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3796 | } |
---|
3797 | } |
---|
3798 | else{ |
---|
3799 | type[index] = 0; |
---|
3800 | pred = curData; |
---|
3801 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3802 | } |
---|
3803 | |
---|
3804 | // assign value to block surfaces |
---|
3805 | pb_pos[ii * strip_dim0_offset + jj] = pred; |
---|
3806 | index ++; |
---|
3807 | cur_data_pos ++; |
---|
3808 | } |
---|
3809 | cur_data_pos += dim0_offset - current_blockcount_y; |
---|
3810 | } |
---|
3811 | /*dealing with the last ii (boundary)*/ |
---|
3812 | { |
---|
3813 | size_t ii = current_blockcount_x - 1; |
---|
3814 | for(size_t jj=0; jj<current_blockcount_y - 1; jj++){ |
---|
3815 | curData = *cur_data_pos; |
---|
3816 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
3817 | diff = curData - pred; |
---|
3818 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3819 | if (itvNum < intvCapacity){ |
---|
3820 | if (diff < 0) itvNum = -itvNum; |
---|
3821 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3822 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
3823 | //ganrantee comporession error against the case of machine-epsilon |
---|
3824 | if(fabs(curData - pred)>realPrecision){ |
---|
3825 | type[index] = 0; |
---|
3826 | pred = curData; |
---|
3827 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3828 | } |
---|
3829 | } |
---|
3830 | else{ |
---|
3831 | type[index] = 0; |
---|
3832 | pred = curData; |
---|
3833 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3834 | } |
---|
3835 | // assign value to next prediction buffer |
---|
3836 | next_pb_pos[jj] = pred; |
---|
3837 | index ++; |
---|
3838 | cur_data_pos ++; |
---|
3839 | } |
---|
3840 | /*dealing with the last jj (boundary)*/ |
---|
3841 | { |
---|
3842 | size_t jj = current_blockcount_y - 1; |
---|
3843 | curData = *cur_data_pos; |
---|
3844 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
3845 | diff = curData - pred; |
---|
3846 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3847 | if (itvNum < intvCapacity){ |
---|
3848 | if (diff < 0) itvNum = -itvNum; |
---|
3849 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3850 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
3851 | //ganrantee comporession error against the case of machine-epsilon |
---|
3852 | if(fabs(curData - pred)>realPrecision){ |
---|
3853 | type[index] = 0; |
---|
3854 | pred = curData; |
---|
3855 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3856 | } |
---|
3857 | } |
---|
3858 | else{ |
---|
3859 | type[index] = 0; |
---|
3860 | pred = curData; |
---|
3861 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
3862 | } |
---|
3863 | |
---|
3864 | // assign value to block surfaces |
---|
3865 | pb_pos[ii * strip_dim0_offset + jj] = pred; |
---|
3866 | // assign value to next prediction buffer |
---|
3867 | next_pb_pos[jj] = pred; |
---|
3868 | |
---|
3869 | index ++; |
---|
3870 | cur_data_pos ++; |
---|
3871 | } |
---|
3872 | } // end ii == -1 |
---|
3873 | unpredictable_count = block_unpredictable_count; |
---|
3874 | total_unpred += unpredictable_count; |
---|
3875 | unpredictable_data += unpredictable_count; |
---|
3876 | reg_count ++; |
---|
3877 | }// end use_reg |
---|
3878 | else{ |
---|
3879 | // use SZ |
---|
3880 | // SZ predication |
---|
3881 | unpredictable_count = 0; |
---|
3882 | double * cur_pb_pos = pb_pos; |
---|
3883 | double * cur_data_pos = data_pos; |
---|
3884 | double curData; |
---|
3885 | double pred2D; |
---|
3886 | double itvNum, diff; |
---|
3887 | size_t index = 0; |
---|
3888 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
3889 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
3890 | curData = *cur_data_pos; |
---|
3891 | if(fabs(curData - mean) <= realPrecision){ |
---|
3892 | // adjust type[index] to intvRadius for coherence with freq in reg |
---|
3893 | type[index] = intvRadius; |
---|
3894 | *cur_pb_pos = mean; |
---|
3895 | } |
---|
3896 | else |
---|
3897 | { |
---|
3898 | pred2D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim0_offset - 1]; |
---|
3899 | diff = curData - pred2D; |
---|
3900 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3901 | if (itvNum < intvCapacity_sz){ |
---|
3902 | if (diff < 0) itvNum = -itvNum; |
---|
3903 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3904 | *cur_pb_pos = pred2D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
3905 | if(type[index] <= intvRadius) type[index] -= 1; |
---|
3906 | //ganrantee comporession error against the case of machine-epsilon |
---|
3907 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
3908 | type[index] = 0; |
---|
3909 | *cur_pb_pos = curData; |
---|
3910 | unpredictable_data[unpredictable_count ++] = curData; |
---|
3911 | } |
---|
3912 | } |
---|
3913 | else{ |
---|
3914 | type[index] = 0; |
---|
3915 | *cur_pb_pos = curData; |
---|
3916 | unpredictable_data[unpredictable_count ++] = curData; |
---|
3917 | } |
---|
3918 | } |
---|
3919 | index ++; |
---|
3920 | cur_pb_pos ++; |
---|
3921 | cur_data_pos ++; |
---|
3922 | } |
---|
3923 | cur_pb_pos += strip_dim0_offset - current_blockcount_y; |
---|
3924 | cur_data_pos += dim0_offset - current_blockcount_y; |
---|
3925 | } |
---|
3926 | /*dealing with the last ii (boundary)*/ |
---|
3927 | { |
---|
3928 | // ii == current_blockcount_x - 1 |
---|
3929 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
3930 | curData = *cur_data_pos; |
---|
3931 | if(fabs(curData - mean) <= realPrecision){ |
---|
3932 | // adjust type[index] to intvRadius for coherence with freq in reg |
---|
3933 | type[index] = intvRadius; |
---|
3934 | *cur_pb_pos = mean; |
---|
3935 | } |
---|
3936 | else |
---|
3937 | { |
---|
3938 | pred2D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim0_offset - 1]; |
---|
3939 | diff = curData - pred2D; |
---|
3940 | itvNum = fabs(diff)/realPrecision + 1; |
---|
3941 | if (itvNum < intvCapacity_sz){ |
---|
3942 | if (diff < 0) itvNum = -itvNum; |
---|
3943 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
3944 | *cur_pb_pos = pred2D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
3945 | if(type[index] <= intvRadius) type[index] -= 1; |
---|
3946 | //ganrantee comporession error against the case of machine-epsilon |
---|
3947 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
3948 | type[index] = 0; |
---|
3949 | *cur_pb_pos = curData; |
---|
3950 | unpredictable_data[unpredictable_count ++] = curData; |
---|
3951 | } |
---|
3952 | } |
---|
3953 | else{ |
---|
3954 | type[index] = 0; |
---|
3955 | *cur_pb_pos = curData; |
---|
3956 | unpredictable_data[unpredictable_count ++] = curData; |
---|
3957 | } |
---|
3958 | } |
---|
3959 | next_pb_pos[jj] = *cur_pb_pos; |
---|
3960 | index ++; |
---|
3961 | cur_pb_pos ++; |
---|
3962 | cur_data_pos ++; |
---|
3963 | } |
---|
3964 | } |
---|
3965 | total_unpred += unpredictable_count; |
---|
3966 | unpredictable_data += unpredictable_count; |
---|
3967 | // change indicator |
---|
3968 | indicator_pos[j] = 1; |
---|
3969 | }// end SZ |
---|
3970 | reg_params_pos ++; |
---|
3971 | data_pos += current_blockcount_y; |
---|
3972 | pb_pos += current_blockcount_y; |
---|
3973 | next_pb_pos += current_blockcount_y; |
---|
3974 | type += current_blockcount_x * current_blockcount_y; |
---|
3975 | }// end j |
---|
3976 | indicator_pos += num_y; |
---|
3977 | double * tmp; |
---|
3978 | tmp = cur_pb_buf; |
---|
3979 | cur_pb_buf = next_pb_buf; |
---|
3980 | next_pb_buf = tmp; |
---|
3981 | }// end i |
---|
3982 | }// end use mean |
---|
3983 | else{ |
---|
3984 | type = result_type; |
---|
3985 | int intvCapacity_sz = intvCapacity - 2; |
---|
3986 | for(size_t i=0; i<num_x; i++){ |
---|
3987 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
3988 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
3989 | data_pos = oriData + offset_x * dim0_offset; |
---|
3990 | |
---|
3991 | cur_pb_buf_pos = cur_pb_buf + strip_dim0_offset + 1; |
---|
3992 | next_pb_buf_pos = next_pb_buf + 1; |
---|
3993 | double * pb_pos = cur_pb_buf_pos; |
---|
3994 | double * next_pb_pos = next_pb_buf_pos; |
---|
3995 | |
---|
3996 | for(size_t j=0; j<num_y; j++){ |
---|
3997 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
3998 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
3999 | /*sampling*/ |
---|
4000 | { |
---|
4001 | // sample [2i + 1, 2i + 1] [2i + 1, bs - 2i] |
---|
4002 | double * cur_data_pos; |
---|
4003 | double curData; |
---|
4004 | double pred_reg, pred_sz; |
---|
4005 | double err_sz = 0.0, err_reg = 0.0; |
---|
4006 | // [1, 1] [3, 3] [5, 5] [7, 7] [9, 9] |
---|
4007 | // [1, 9] [3, 7] [7, 3] [9, 1] |
---|
4008 | int count = 0; |
---|
4009 | for(int i=1; i<current_blockcount_x; i+=2){ |
---|
4010 | cur_data_pos = data_pos + i * dim0_offset + i; |
---|
4011 | curData = *cur_data_pos; |
---|
4012 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim0_offset] - cur_data_pos[-dim0_offset - 1]; |
---|
4013 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c]; |
---|
4014 | err_sz += fabs(pred_sz - curData); |
---|
4015 | err_reg += fabs(pred_reg - curData); |
---|
4016 | |
---|
4017 | cur_data_pos = data_pos + i * dim0_offset + (block_size - i); |
---|
4018 | curData = *cur_data_pos; |
---|
4019 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim0_offset] - cur_data_pos[-dim0_offset - 1]; |
---|
4020 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * (block_size - i) + reg_params_pos[params_offset_c]; |
---|
4021 | err_sz += fabs(pred_sz - curData); |
---|
4022 | err_reg += fabs(pred_reg - curData); |
---|
4023 | |
---|
4024 | count += 2; |
---|
4025 | } |
---|
4026 | err_sz += realPrecision * count * 0.81; |
---|
4027 | use_reg = (err_reg < err_sz); |
---|
4028 | |
---|
4029 | } |
---|
4030 | if(use_reg) |
---|
4031 | { |
---|
4032 | { |
---|
4033 | /*predict coefficients in current block via previous reg_block*/ |
---|
4034 | double cur_coeff; |
---|
4035 | double diff, itvNum; |
---|
4036 | for(int e=0; e<3; e++){ |
---|
4037 | cur_coeff = reg_params_pos[e*num_blocks]; |
---|
4038 | diff = cur_coeff - last_coeffcients[e]; |
---|
4039 | itvNum = fabs(diff)/precision[e] + 1; |
---|
4040 | if (itvNum < coeff_intvCapacity_sz){ |
---|
4041 | if (diff < 0) itvNum = -itvNum; |
---|
4042 | coeff_type[e][coeff_index] = (int) (itvNum/2) + coeff_intvRadius; |
---|
4043 | last_coeffcients[e] = last_coeffcients[e] + 2 * (coeff_type[e][coeff_index] - coeff_intvRadius) * precision[e]; |
---|
4044 | //ganrantee comporession error against the case of machine-epsilon |
---|
4045 | if(fabs(cur_coeff - last_coeffcients[e])>precision[e]){ |
---|
4046 | coeff_type[e][coeff_index] = 0; |
---|
4047 | last_coeffcients[e] = cur_coeff; |
---|
4048 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
4049 | } |
---|
4050 | } |
---|
4051 | else{ |
---|
4052 | coeff_type[e][coeff_index] = 0; |
---|
4053 | last_coeffcients[e] = cur_coeff; |
---|
4054 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
4055 | } |
---|
4056 | } |
---|
4057 | coeff_index ++; |
---|
4058 | } |
---|
4059 | double curData; |
---|
4060 | double pred; |
---|
4061 | double itvNum; |
---|
4062 | double diff; |
---|
4063 | size_t index = 0; |
---|
4064 | size_t block_unpredictable_count = 0; |
---|
4065 | double * cur_data_pos = data_pos; |
---|
4066 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
4067 | for(size_t jj=0; jj<current_blockcount_y - 1; jj++){ |
---|
4068 | curData = *cur_data_pos; |
---|
4069 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
4070 | diff = curData - pred; |
---|
4071 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4072 | if (itvNum < intvCapacity){ |
---|
4073 | if (diff < 0) itvNum = -itvNum; |
---|
4074 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4075 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
4076 | //ganrantee comporession error against the case of machine-epsilon |
---|
4077 | if(fabs(curData - pred)>realPrecision){ |
---|
4078 | type[index] = 0; |
---|
4079 | pred = curData; |
---|
4080 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4081 | } |
---|
4082 | } |
---|
4083 | else{ |
---|
4084 | type[index] = 0; |
---|
4085 | pred = curData; |
---|
4086 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4087 | } |
---|
4088 | index ++; |
---|
4089 | cur_data_pos ++; |
---|
4090 | } |
---|
4091 | /*dealing with the last jj (boundary)*/ |
---|
4092 | { |
---|
4093 | // jj == current_blockcount_y - 1 |
---|
4094 | size_t jj = current_blockcount_y - 1; |
---|
4095 | curData = *cur_data_pos; |
---|
4096 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
4097 | diff = curData - pred; |
---|
4098 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4099 | if (itvNum < intvCapacity){ |
---|
4100 | if (diff < 0) itvNum = -itvNum; |
---|
4101 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4102 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
4103 | //ganrantee comporession error against the case of machine-epsilon |
---|
4104 | if(fabs(curData - pred)>realPrecision){ |
---|
4105 | type[index] = 0; |
---|
4106 | pred = curData; |
---|
4107 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4108 | } |
---|
4109 | } |
---|
4110 | else{ |
---|
4111 | type[index] = 0; |
---|
4112 | pred = curData; |
---|
4113 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4114 | } |
---|
4115 | |
---|
4116 | // assign value to block surfaces |
---|
4117 | pb_pos[ii * strip_dim0_offset + jj] = pred; |
---|
4118 | index ++; |
---|
4119 | cur_data_pos ++; |
---|
4120 | } |
---|
4121 | cur_data_pos += dim0_offset - current_blockcount_y; |
---|
4122 | } |
---|
4123 | /*dealing with the last ii (boundary)*/ |
---|
4124 | { |
---|
4125 | size_t ii = current_blockcount_x - 1; |
---|
4126 | for(size_t jj=0; jj<current_blockcount_y - 1; jj++){ |
---|
4127 | curData = *cur_data_pos; |
---|
4128 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
4129 | diff = curData - pred; |
---|
4130 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4131 | if (itvNum < intvCapacity){ |
---|
4132 | if (diff < 0) itvNum = -itvNum; |
---|
4133 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4134 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
4135 | //ganrantee comporession error against the case of machine-epsilon |
---|
4136 | if(fabs(curData - pred)>realPrecision){ |
---|
4137 | type[index] = 0; |
---|
4138 | pred = curData; |
---|
4139 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4140 | } |
---|
4141 | } |
---|
4142 | else{ |
---|
4143 | type[index] = 0; |
---|
4144 | pred = curData; |
---|
4145 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4146 | } |
---|
4147 | // assign value to next prediction buffer |
---|
4148 | next_pb_pos[jj] = pred; |
---|
4149 | index ++; |
---|
4150 | cur_data_pos ++; |
---|
4151 | } |
---|
4152 | /*dealing with the last jj (boundary)*/ |
---|
4153 | { |
---|
4154 | // jj == current_blockcount_y - 1 |
---|
4155 | size_t jj = current_blockcount_y - 1; |
---|
4156 | curData = *cur_data_pos; |
---|
4157 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2]; |
---|
4158 | diff = curData - pred; |
---|
4159 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4160 | if (itvNum < intvCapacity){ |
---|
4161 | if (diff < 0) itvNum = -itvNum; |
---|
4162 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4163 | pred = pred + 2 * (type[index] - intvRadius) * realPrecision; |
---|
4164 | //ganrantee comporession error against the case of machine-epsilon |
---|
4165 | if(fabs(curData - pred)>realPrecision){ |
---|
4166 | type[index] = 0; |
---|
4167 | pred = curData; |
---|
4168 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4169 | } |
---|
4170 | } |
---|
4171 | else{ |
---|
4172 | type[index] = 0; |
---|
4173 | pred = curData; |
---|
4174 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4175 | } |
---|
4176 | |
---|
4177 | // assign value to block surfaces |
---|
4178 | pb_pos[ii * strip_dim0_offset + jj] = pred; |
---|
4179 | // assign value to next prediction buffer |
---|
4180 | next_pb_pos[jj] = pred; |
---|
4181 | |
---|
4182 | index ++; |
---|
4183 | cur_data_pos ++; |
---|
4184 | } |
---|
4185 | } // end ii == -1 |
---|
4186 | unpredictable_count = block_unpredictable_count; |
---|
4187 | total_unpred += unpredictable_count; |
---|
4188 | unpredictable_data += unpredictable_count; |
---|
4189 | reg_count ++; |
---|
4190 | }// end use_reg |
---|
4191 | else{ |
---|
4192 | // use SZ |
---|
4193 | // SZ predication |
---|
4194 | unpredictable_count = 0; |
---|
4195 | double * cur_pb_pos = pb_pos; |
---|
4196 | double * cur_data_pos = data_pos; |
---|
4197 | double curData; |
---|
4198 | double pred2D; |
---|
4199 | double itvNum, diff; |
---|
4200 | size_t index = 0; |
---|
4201 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
4202 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4203 | curData = *cur_data_pos; |
---|
4204 | |
---|
4205 | pred2D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim0_offset - 1]; |
---|
4206 | diff = curData - pred2D; |
---|
4207 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4208 | if (itvNum < intvCapacity_sz){ |
---|
4209 | if (diff < 0) itvNum = -itvNum; |
---|
4210 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4211 | *cur_pb_pos = pred2D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4212 | //ganrantee comporession error against the case of machine-epsilon |
---|
4213 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
4214 | type[index] = 0; |
---|
4215 | *cur_pb_pos = curData; |
---|
4216 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4217 | } |
---|
4218 | } |
---|
4219 | else{ |
---|
4220 | type[index] = 0; |
---|
4221 | *cur_pb_pos = curData; |
---|
4222 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4223 | } |
---|
4224 | |
---|
4225 | index ++; |
---|
4226 | cur_pb_pos ++; |
---|
4227 | cur_data_pos ++; |
---|
4228 | } |
---|
4229 | cur_pb_pos += strip_dim0_offset - current_blockcount_y; |
---|
4230 | cur_data_pos += dim0_offset - current_blockcount_y; |
---|
4231 | } |
---|
4232 | /*dealing with the last ii (boundary)*/ |
---|
4233 | { |
---|
4234 | // ii == current_blockcount_x - 1 |
---|
4235 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4236 | curData = *cur_data_pos; |
---|
4237 | |
---|
4238 | pred2D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim0_offset - 1]; |
---|
4239 | diff = curData - pred2D; |
---|
4240 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4241 | if (itvNum < intvCapacity_sz){ |
---|
4242 | if (diff < 0) itvNum = -itvNum; |
---|
4243 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4244 | *cur_pb_pos = pred2D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4245 | //ganrantee comporession error against the case of machine-epsilon |
---|
4246 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
4247 | type[index] = 0; |
---|
4248 | *cur_pb_pos = curData; |
---|
4249 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4250 | } |
---|
4251 | } |
---|
4252 | else{ |
---|
4253 | type[index] = 0; |
---|
4254 | *cur_pb_pos = curData; |
---|
4255 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4256 | } |
---|
4257 | next_pb_pos[jj] = *cur_pb_pos; |
---|
4258 | index ++; |
---|
4259 | cur_pb_pos ++; |
---|
4260 | cur_data_pos ++; |
---|
4261 | } |
---|
4262 | } |
---|
4263 | total_unpred += unpredictable_count; |
---|
4264 | unpredictable_data += unpredictable_count; |
---|
4265 | // change indicator |
---|
4266 | indicator_pos[j] = 1; |
---|
4267 | }// end SZ |
---|
4268 | reg_params_pos ++; |
---|
4269 | data_pos += current_blockcount_y; |
---|
4270 | pb_pos += current_blockcount_y; |
---|
4271 | next_pb_pos += current_blockcount_y; |
---|
4272 | type += current_blockcount_x * current_blockcount_y; |
---|
4273 | }// end j |
---|
4274 | indicator_pos += num_y; |
---|
4275 | double * tmp; |
---|
4276 | tmp = cur_pb_buf; |
---|
4277 | cur_pb_buf = next_pb_buf; |
---|
4278 | next_pb_buf = tmp; |
---|
4279 | }// end i |
---|
4280 | } |
---|
4281 | free(prediction_buffer_1); |
---|
4282 | free(prediction_buffer_2); |
---|
4283 | |
---|
4284 | int stateNum = 2*quantization_intervals; |
---|
4285 | HuffmanTree* huffmanTree = createHuffmanTree(stateNum); |
---|
4286 | |
---|
4287 | size_t nodeCount = 0; |
---|
4288 | size_t i = 0; |
---|
4289 | init(huffmanTree, result_type, num_elements); |
---|
4290 | for (i = 0; i < stateNum; i++) |
---|
4291 | if (huffmanTree->code[i]) nodeCount++; |
---|
4292 | nodeCount = nodeCount*2-1; |
---|
4293 | |
---|
4294 | unsigned char *treeBytes; |
---|
4295 | unsigned int treeByteSize = convert_HuffTree_to_bytes_anyStates(huffmanTree, nodeCount, &treeBytes); |
---|
4296 | |
---|
4297 | unsigned int meta_data_offset = 3 + 1 + MetaDataByteLength; |
---|
4298 | // total size metadata # elements real precision intervals nodeCount huffman block index unpredicatable count mean unpred size elements |
---|
4299 | unsigned char * result = (unsigned char *) calloc(meta_data_offset + exe_params->SZ_SIZE_TYPE + sizeof(double) + sizeof(int) + sizeof(int) + treeByteSize + num_blocks * sizeof(unsigned short) + num_blocks * sizeof(unsigned short) + num_blocks * sizeof(double) + total_unpred * sizeof(double) + num_elements * sizeof(int), 1); |
---|
4300 | unsigned char * result_pos = result; |
---|
4301 | initRandomAccessBytes(result_pos); |
---|
4302 | result_pos += meta_data_offset; |
---|
4303 | |
---|
4304 | sizeToBytes(result_pos, num_elements); |
---|
4305 | result_pos += exe_params->SZ_SIZE_TYPE; |
---|
4306 | |
---|
4307 | intToBytes_bigEndian(result_pos, block_size); |
---|
4308 | result_pos += sizeof(int); |
---|
4309 | doubleToBytes(result_pos, realPrecision); |
---|
4310 | result_pos += sizeof(double); |
---|
4311 | intToBytes_bigEndian(result_pos, quantization_intervals); |
---|
4312 | result_pos += sizeof(int); |
---|
4313 | intToBytes_bigEndian(result_pos, treeByteSize); |
---|
4314 | result_pos += sizeof(int); |
---|
4315 | intToBytes_bigEndian(result_pos, nodeCount); |
---|
4316 | result_pos += sizeof(int); |
---|
4317 | memcpy(result_pos, treeBytes, treeByteSize); |
---|
4318 | result_pos += treeByteSize; |
---|
4319 | free(treeBytes); |
---|
4320 | |
---|
4321 | memcpy(result_pos, &use_mean, sizeof(unsigned char)); |
---|
4322 | result_pos += sizeof(unsigned char); |
---|
4323 | memcpy(result_pos, &mean, sizeof(double)); |
---|
4324 | result_pos += sizeof(double); |
---|
4325 | |
---|
4326 | size_t indicator_size = convertIntArray2ByteArray_fast_1b_to_result(indicator, num_blocks, result_pos); |
---|
4327 | result_pos += indicator_size; |
---|
4328 | |
---|
4329 | //convert the lead/mid/resi to byte stream |
---|
4330 | if(reg_count>0){ |
---|
4331 | for(int e=0; e<3; e++){ |
---|
4332 | int stateNum = 2*coeff_intvCapacity_sz; |
---|
4333 | HuffmanTree* huffmanTree = createHuffmanTree(stateNum); |
---|
4334 | size_t nodeCount = 0; |
---|
4335 | init(huffmanTree, coeff_type[e], reg_count); |
---|
4336 | size_t i = 0; |
---|
4337 | for (i = 0; i < huffmanTree->stateNum; i++) |
---|
4338 | if (huffmanTree->code[i]) nodeCount++; |
---|
4339 | nodeCount = nodeCount*2-1; |
---|
4340 | unsigned char *treeBytes; |
---|
4341 | unsigned int treeByteSize = convert_HuffTree_to_bytes_anyStates(huffmanTree, nodeCount, &treeBytes); |
---|
4342 | doubleToBytes(result_pos, precision[e]); |
---|
4343 | result_pos += sizeof(double); |
---|
4344 | intToBytes_bigEndian(result_pos, coeff_intvRadius); |
---|
4345 | result_pos += sizeof(int); |
---|
4346 | intToBytes_bigEndian(result_pos, treeByteSize); |
---|
4347 | result_pos += sizeof(int); |
---|
4348 | intToBytes_bigEndian(result_pos, nodeCount); |
---|
4349 | result_pos += sizeof(int); |
---|
4350 | memcpy(result_pos, treeBytes, treeByteSize); |
---|
4351 | result_pos += treeByteSize; |
---|
4352 | free(treeBytes); |
---|
4353 | size_t typeArray_size = 0; |
---|
4354 | encode(huffmanTree, coeff_type[e], reg_count, result_pos + sizeof(size_t), &typeArray_size); |
---|
4355 | sizeToBytes(result_pos, typeArray_size); |
---|
4356 | result_pos += sizeof(size_t) + typeArray_size; |
---|
4357 | intToBytes_bigEndian(result_pos, coeff_unpredictable_count[e]); |
---|
4358 | result_pos += sizeof(int); |
---|
4359 | memcpy(result_pos, coeff_unpred_data[e], coeff_unpredictable_count[e]*sizeof(double)); |
---|
4360 | result_pos += coeff_unpredictable_count[e]*sizeof(double); |
---|
4361 | SZ_ReleaseHuffman(huffmanTree); |
---|
4362 | } |
---|
4363 | } |
---|
4364 | free(coeff_result_type); |
---|
4365 | free(coeff_unpredictable_data); |
---|
4366 | |
---|
4367 | //record the number of unpredictable data and also store them |
---|
4368 | memcpy(result_pos, &total_unpred, sizeof(size_t)); |
---|
4369 | result_pos += sizeof(size_t); |
---|
4370 | memcpy(result_pos, result_unpredictable_data, total_unpred * sizeof(double)); |
---|
4371 | result_pos += total_unpred * sizeof(double); |
---|
4372 | size_t typeArray_size = 0; |
---|
4373 | encode(huffmanTree, result_type, num_elements, result_pos, &typeArray_size); |
---|
4374 | result_pos += typeArray_size; |
---|
4375 | |
---|
4376 | size_t totalEncodeSize = result_pos - result; |
---|
4377 | free(indicator); |
---|
4378 | free(result_unpredictable_data); |
---|
4379 | free(result_type); |
---|
4380 | free(reg_params); |
---|
4381 | |
---|
4382 | SZ_ReleaseHuffman(huffmanTree); |
---|
4383 | *comp_size = totalEncodeSize; |
---|
4384 | |
---|
4385 | return result; |
---|
4386 | } |
---|
4387 | |
---|
4388 | unsigned char * SZ_compress_double_3D_MDQ_nonblocked_with_blocked_regression(double *oriData, size_t r1, size_t r2, size_t r3, double realPrecision, size_t * comp_size){ |
---|
4389 | |
---|
4390 | unsigned int quantization_intervals; |
---|
4391 | double sz_sample_correct_freq = -1;//0.5; //-1 |
---|
4392 | double dense_pos; |
---|
4393 | double mean_flush_freq; |
---|
4394 | unsigned char use_mean = 0; |
---|
4395 | |
---|
4396 | // calculate block dims |
---|
4397 | size_t num_x, num_y, num_z; |
---|
4398 | size_t block_size = 6; |
---|
4399 | SZ_COMPUTE_3D_NUMBER_OF_BLOCKS(r1, num_x, block_size); |
---|
4400 | SZ_COMPUTE_3D_NUMBER_OF_BLOCKS(r2, num_y, block_size); |
---|
4401 | SZ_COMPUTE_3D_NUMBER_OF_BLOCKS(r3, num_z, block_size); |
---|
4402 | |
---|
4403 | size_t split_index_x, split_index_y, split_index_z; |
---|
4404 | size_t early_blockcount_x, early_blockcount_y, early_blockcount_z; |
---|
4405 | size_t late_blockcount_x, late_blockcount_y, late_blockcount_z; |
---|
4406 | SZ_COMPUTE_BLOCKCOUNT(r1, num_x, split_index_x, early_blockcount_x, late_blockcount_x); |
---|
4407 | SZ_COMPUTE_BLOCKCOUNT(r2, num_y, split_index_y, early_blockcount_y, late_blockcount_y); |
---|
4408 | SZ_COMPUTE_BLOCKCOUNT(r3, num_z, split_index_z, early_blockcount_z, late_blockcount_z); |
---|
4409 | |
---|
4410 | size_t max_num_block_elements = early_blockcount_x * early_blockcount_y * early_blockcount_z; |
---|
4411 | size_t num_blocks = num_x * num_y * num_z; |
---|
4412 | size_t num_elements = r1 * r2 * r3; |
---|
4413 | |
---|
4414 | size_t dim0_offset = r2 * r3; |
---|
4415 | size_t dim1_offset = r3; |
---|
4416 | |
---|
4417 | int * result_type = (int *) malloc(num_elements * sizeof(int)); |
---|
4418 | size_t unpred_data_max_size = max_num_block_elements; |
---|
4419 | double * result_unpredictable_data = (double *) malloc(unpred_data_max_size * sizeof(double) * num_blocks); |
---|
4420 | size_t total_unpred = 0; |
---|
4421 | size_t unpredictable_count; |
---|
4422 | size_t max_unpred_count = 0; |
---|
4423 | double * data_pos = oriData; |
---|
4424 | int * type = result_type; |
---|
4425 | size_t type_offset; |
---|
4426 | size_t offset_x, offset_y, offset_z; |
---|
4427 | size_t current_blockcount_x, current_blockcount_y, current_blockcount_z; |
---|
4428 | |
---|
4429 | double * reg_params = (double *) malloc(num_blocks * 4 * sizeof(double)); |
---|
4430 | double * reg_params_pos = reg_params; |
---|
4431 | // move regression part out |
---|
4432 | size_t params_offset_b = num_blocks; |
---|
4433 | size_t params_offset_c = 2*num_blocks; |
---|
4434 | size_t params_offset_d = 3*num_blocks; |
---|
4435 | for(size_t i=0; i<num_x; i++){ |
---|
4436 | for(size_t j=0; j<num_y; j++){ |
---|
4437 | for(size_t k=0; k<num_z; k++){ |
---|
4438 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
4439 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
4440 | current_blockcount_z = (k < split_index_z) ? early_blockcount_z : late_blockcount_z; |
---|
4441 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
4442 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
4443 | offset_z = (k < split_index_z) ? k * early_blockcount_z : k * late_blockcount_z + split_index_z; |
---|
4444 | |
---|
4445 | data_pos = oriData + offset_x * dim0_offset + offset_y * dim1_offset + offset_z; |
---|
4446 | /*Calculate regression coefficients*/ |
---|
4447 | { |
---|
4448 | double * cur_data_pos = data_pos; |
---|
4449 | double fx = 0.0; |
---|
4450 | double fy = 0.0; |
---|
4451 | double fz = 0.0; |
---|
4452 | double f = 0; |
---|
4453 | double sum_x, sum_y; |
---|
4454 | double curData; |
---|
4455 | for(size_t i=0; i<current_blockcount_x; i++){ |
---|
4456 | sum_x = 0; |
---|
4457 | for(size_t j=0; j<current_blockcount_y; j++){ |
---|
4458 | sum_y = 0; |
---|
4459 | for(size_t k=0; k<current_blockcount_z; k++){ |
---|
4460 | curData = *cur_data_pos; |
---|
4461 | // f += curData; |
---|
4462 | // fx += curData * i; |
---|
4463 | // fy += curData * j; |
---|
4464 | // fz += curData * k; |
---|
4465 | sum_y += curData; |
---|
4466 | fz += curData * k; |
---|
4467 | cur_data_pos ++; |
---|
4468 | } |
---|
4469 | fy += sum_y * j; |
---|
4470 | sum_x += sum_y; |
---|
4471 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
4472 | } |
---|
4473 | fx += sum_x * i; |
---|
4474 | f += sum_x; |
---|
4475 | cur_data_pos += dim0_offset - current_blockcount_y * dim1_offset; |
---|
4476 | } |
---|
4477 | double coeff = 1.0 / (current_blockcount_x * current_blockcount_y * current_blockcount_z); |
---|
4478 | reg_params_pos[0] = (2 * fx / (current_blockcount_x - 1) - f) * 6 * coeff / (current_blockcount_x + 1); |
---|
4479 | reg_params_pos[params_offset_b] = (2 * fy / (current_blockcount_y - 1) - f) * 6 * coeff / (current_blockcount_y + 1); |
---|
4480 | reg_params_pos[params_offset_c] = (2 * fz / (current_blockcount_z - 1) - f) * 6 * coeff / (current_blockcount_z + 1); |
---|
4481 | reg_params_pos[params_offset_d] = f * coeff - ((current_blockcount_x - 1) * reg_params_pos[0] / 2 + (current_blockcount_y - 1) * reg_params_pos[params_offset_b] / 2 + (current_blockcount_z - 1) * reg_params_pos[params_offset_c] / 2); |
---|
4482 | } |
---|
4483 | reg_params_pos ++; |
---|
4484 | } |
---|
4485 | } |
---|
4486 | } |
---|
4487 | |
---|
4488 | //Compress coefficient arrays |
---|
4489 | double precision_a, precision_b, precision_c, precision_d; |
---|
4490 | double rel_param_err = 0.025; |
---|
4491 | precision_a = rel_param_err * realPrecision / late_blockcount_x; |
---|
4492 | precision_b = rel_param_err * realPrecision / late_blockcount_y; |
---|
4493 | precision_c = rel_param_err * realPrecision / late_blockcount_z; |
---|
4494 | precision_d = rel_param_err * realPrecision; |
---|
4495 | |
---|
4496 | if(exe_params->optQuantMode==1) |
---|
4497 | { |
---|
4498 | quantization_intervals = optimize_intervals_double_3D_with_freq_and_dense_pos(oriData, r1, r2, r3, realPrecision, &dense_pos, &sz_sample_correct_freq, &mean_flush_freq); |
---|
4499 | if(mean_flush_freq > 0.5 || mean_flush_freq > sz_sample_correct_freq) use_mean = 1; |
---|
4500 | updateQuantizationInfo(quantization_intervals); |
---|
4501 | } |
---|
4502 | else{ |
---|
4503 | quantization_intervals = exe_params->intvCapacity; |
---|
4504 | } |
---|
4505 | |
---|
4506 | double mean = 0; |
---|
4507 | if(use_mean){ |
---|
4508 | // compute mean |
---|
4509 | double sum = 0.0; |
---|
4510 | size_t mean_count = 0; |
---|
4511 | for(size_t i=0; i<num_elements; i++){ |
---|
4512 | if(fabs(oriData[i] - dense_pos) < realPrecision){ |
---|
4513 | sum += oriData[i]; |
---|
4514 | mean_count ++; |
---|
4515 | } |
---|
4516 | } |
---|
4517 | if(mean_count > 0) mean = sum / mean_count; |
---|
4518 | } |
---|
4519 | |
---|
4520 | double tmp_realPrecision = realPrecision; |
---|
4521 | |
---|
4522 | // use two prediction buffers for higher performance |
---|
4523 | double * unpredictable_data = result_unpredictable_data; |
---|
4524 | unsigned char * indicator = (unsigned char *) malloc(num_blocks * sizeof(unsigned char)); |
---|
4525 | memset(indicator, 0, num_blocks * sizeof(unsigned char)); |
---|
4526 | size_t reg_count = 0; |
---|
4527 | size_t strip_dim_0 = early_blockcount_x + 1; |
---|
4528 | size_t strip_dim_1 = r2 + 1; |
---|
4529 | size_t strip_dim_2 = r3 + 1; |
---|
4530 | size_t strip_dim0_offset = strip_dim_1 * strip_dim_2; |
---|
4531 | size_t strip_dim1_offset = strip_dim_2; |
---|
4532 | unsigned char * indicator_pos = indicator; |
---|
4533 | |
---|
4534 | size_t prediction_buffer_size = strip_dim_0 * strip_dim0_offset * sizeof(double); |
---|
4535 | double * prediction_buffer_1 = (double *) malloc(prediction_buffer_size); |
---|
4536 | memset(prediction_buffer_1, 0, prediction_buffer_size); |
---|
4537 | double * prediction_buffer_2 = (double *) malloc(prediction_buffer_size); |
---|
4538 | memset(prediction_buffer_2, 0, prediction_buffer_size); |
---|
4539 | double * cur_pb_buf = prediction_buffer_1; |
---|
4540 | double * next_pb_buf = prediction_buffer_2; |
---|
4541 | double * cur_pb_buf_pos; |
---|
4542 | double * next_pb_buf_pos; |
---|
4543 | int intvCapacity = exe_params->intvCapacity; |
---|
4544 | int intvRadius = exe_params->intvRadius; |
---|
4545 | int use_reg = 0; |
---|
4546 | double noise = realPrecision * 1.22; |
---|
4547 | |
---|
4548 | reg_params_pos = reg_params; |
---|
4549 | // compress the regression coefficients on the fly |
---|
4550 | double last_coeffcients[4] = {0.0}; |
---|
4551 | int coeff_intvCapacity_sz = 65536; |
---|
4552 | int coeff_intvRadius = coeff_intvCapacity_sz / 2; |
---|
4553 | int * coeff_type[4]; |
---|
4554 | int * coeff_result_type = (int *) malloc(num_blocks*4*sizeof(int)); |
---|
4555 | double * coeff_unpred_data[4]; |
---|
4556 | double * coeff_unpredictable_data = (double *) malloc(num_blocks*4*sizeof(double)); |
---|
4557 | double precision[4]; |
---|
4558 | precision[0] = precision_a, precision[1] = precision_b, precision[2] = precision_c, precision[3] = precision_d; |
---|
4559 | for(int i=0; i<4; i++){ |
---|
4560 | coeff_type[i] = coeff_result_type + i * num_blocks; |
---|
4561 | coeff_unpred_data[i] = coeff_unpredictable_data + i * num_blocks; |
---|
4562 | } |
---|
4563 | int coeff_index = 0; |
---|
4564 | unsigned int coeff_unpredictable_count[4] = {0}; |
---|
4565 | |
---|
4566 | if(use_mean){ |
---|
4567 | int intvCapacity_sz = intvCapacity - 2; |
---|
4568 | for(size_t i=0; i<num_x; i++){ |
---|
4569 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
4570 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
4571 | for(size_t j=0; j<num_y; j++){ |
---|
4572 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
4573 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
4574 | data_pos = oriData + offset_x * dim0_offset + offset_y * dim1_offset; |
---|
4575 | type_offset = offset_x * dim0_offset + offset_y * current_blockcount_x * dim1_offset; |
---|
4576 | type = result_type + type_offset; |
---|
4577 | |
---|
4578 | // prediction buffer is (current_block_count_x + 1) * (current_block_count_y + 1) * (current_block_count_z + 1) |
---|
4579 | cur_pb_buf_pos = cur_pb_buf + offset_y * strip_dim1_offset + strip_dim0_offset + strip_dim1_offset + 1; |
---|
4580 | next_pb_buf_pos = next_pb_buf + offset_y * strip_dim1_offset + strip_dim1_offset + 1; |
---|
4581 | |
---|
4582 | size_t current_blockcount_z; |
---|
4583 | double * pb_pos = cur_pb_buf_pos; |
---|
4584 | double * next_pb_pos = next_pb_buf_pos; |
---|
4585 | size_t strip_unpredictable_count = 0; |
---|
4586 | for(size_t k=0; k<num_z; k++){ |
---|
4587 | current_blockcount_z = (k < split_index_z) ? early_blockcount_z : late_blockcount_z; |
---|
4588 | |
---|
4589 | /*sampling and decide which predictor*/ |
---|
4590 | { |
---|
4591 | // sample point [1, 1, 1] [1, 1, 4] [1, 4, 1] [1, 4, 4] [4, 1, 1] [4, 1, 4] [4, 4, 1] [4, 4, 4] |
---|
4592 | double * cur_data_pos; |
---|
4593 | double curData; |
---|
4594 | double pred_reg, pred_sz; |
---|
4595 | double err_sz = 0.0, err_reg = 0.0; |
---|
4596 | int bmi = 0; |
---|
4597 | if(i>0 && j>0 && k>0){ |
---|
4598 | for(int i=0; i<block_size; i++){ |
---|
4599 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + i; |
---|
4600 | curData = *cur_data_pos; |
---|
4601 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4602 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4603 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4604 | err_reg += fabs(pred_reg - curData); |
---|
4605 | |
---|
4606 | bmi = block_size - i; |
---|
4607 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + bmi; |
---|
4608 | curData = *cur_data_pos; |
---|
4609 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4610 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4611 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4612 | err_reg += fabs(pred_reg - curData); |
---|
4613 | |
---|
4614 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + i; |
---|
4615 | curData = *cur_data_pos; |
---|
4616 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4617 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4618 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4619 | err_reg += fabs(pred_reg - curData); |
---|
4620 | |
---|
4621 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + bmi; |
---|
4622 | curData = *cur_data_pos; |
---|
4623 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4624 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4625 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4626 | err_reg += fabs(pred_reg - curData); |
---|
4627 | } |
---|
4628 | } |
---|
4629 | else{ |
---|
4630 | for(int i=1; i<block_size; i++){ |
---|
4631 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + i; |
---|
4632 | curData = *cur_data_pos; |
---|
4633 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4634 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4635 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4636 | err_reg += fabs(pred_reg - curData); |
---|
4637 | |
---|
4638 | bmi = block_size - i; |
---|
4639 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + bmi; |
---|
4640 | curData = *cur_data_pos; |
---|
4641 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4642 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4643 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4644 | err_reg += fabs(pred_reg - curData); |
---|
4645 | |
---|
4646 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + i; |
---|
4647 | curData = *cur_data_pos; |
---|
4648 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4649 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4650 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4651 | err_reg += fabs(pred_reg - curData); |
---|
4652 | |
---|
4653 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + bmi; |
---|
4654 | curData = *cur_data_pos; |
---|
4655 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4656 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4657 | err_sz += MIN(fabs(pred_sz - curData) + noise, fabs(mean - curData)); |
---|
4658 | err_reg += fabs(pred_reg - curData); |
---|
4659 | |
---|
4660 | } |
---|
4661 | } |
---|
4662 | use_reg = (err_reg < err_sz); |
---|
4663 | } |
---|
4664 | if(use_reg){ |
---|
4665 | { |
---|
4666 | /*predict coefficients in current block via previous reg_block*/ |
---|
4667 | double cur_coeff; |
---|
4668 | double diff, itvNum; |
---|
4669 | for(int e=0; e<4; e++){ |
---|
4670 | cur_coeff = reg_params_pos[e*num_blocks]; |
---|
4671 | diff = cur_coeff - last_coeffcients[e]; |
---|
4672 | itvNum = fabs(diff)/precision[e] + 1; |
---|
4673 | if (itvNum < coeff_intvCapacity_sz){ |
---|
4674 | if (diff < 0) itvNum = -itvNum; |
---|
4675 | coeff_type[e][coeff_index] = (int) (itvNum/2) + coeff_intvRadius; |
---|
4676 | last_coeffcients[e] = last_coeffcients[e] + 2 * (coeff_type[e][coeff_index] - coeff_intvRadius) * precision[e]; |
---|
4677 | //ganrantee comporession error against the case of machine-epsilon |
---|
4678 | if(fabs(cur_coeff - last_coeffcients[e])>precision[e]){ |
---|
4679 | coeff_type[e][coeff_index] = 0; |
---|
4680 | last_coeffcients[e] = cur_coeff; |
---|
4681 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
4682 | } |
---|
4683 | } |
---|
4684 | else{ |
---|
4685 | coeff_type[e][coeff_index] = 0; |
---|
4686 | last_coeffcients[e] = cur_coeff; |
---|
4687 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
4688 | } |
---|
4689 | } |
---|
4690 | coeff_index ++; |
---|
4691 | } |
---|
4692 | double curData; |
---|
4693 | double pred; |
---|
4694 | double itvNum; |
---|
4695 | double diff; |
---|
4696 | size_t index = 0; |
---|
4697 | size_t block_unpredictable_count = 0; |
---|
4698 | double * cur_data_pos = data_pos; |
---|
4699 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
4700 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4701 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
4702 | curData = *cur_data_pos; |
---|
4703 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2] * kk + last_coeffcients[3]; |
---|
4704 | diff = curData - pred; |
---|
4705 | itvNum = fabs(diff)/tmp_realPrecision + 1; |
---|
4706 | if (itvNum < intvCapacity){ |
---|
4707 | if (diff < 0) itvNum = -itvNum; |
---|
4708 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4709 | pred = pred + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4710 | //ganrantee comporession error against the case of machine-epsilon |
---|
4711 | if(fabs(curData - pred)>tmp_realPrecision){ |
---|
4712 | type[index] = 0; |
---|
4713 | pred = curData; |
---|
4714 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4715 | } |
---|
4716 | } |
---|
4717 | else{ |
---|
4718 | type[index] = 0; |
---|
4719 | pred = curData; |
---|
4720 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4721 | } |
---|
4722 | if((jj == current_blockcount_y - 1) || (kk == current_blockcount_z - 1)){ |
---|
4723 | // assign value to block surfaces |
---|
4724 | pb_pos[ii * strip_dim0_offset + jj * strip_dim1_offset + kk] = pred; |
---|
4725 | } |
---|
4726 | index ++; |
---|
4727 | cur_data_pos ++; |
---|
4728 | } |
---|
4729 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
4730 | } |
---|
4731 | cur_data_pos += dim0_offset - current_blockcount_y * dim1_offset; |
---|
4732 | } |
---|
4733 | /*dealing with the last ii (boundary)*/ |
---|
4734 | { |
---|
4735 | // ii == current_blockcount_x - 1 |
---|
4736 | size_t ii = current_blockcount_x - 1; |
---|
4737 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4738 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
4739 | curData = *cur_data_pos; |
---|
4740 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2] * kk + last_coeffcients[3]; |
---|
4741 | diff = curData - pred; |
---|
4742 | itvNum = fabs(diff)/tmp_realPrecision + 1; |
---|
4743 | if (itvNum < intvCapacity){ |
---|
4744 | if (diff < 0) itvNum = -itvNum; |
---|
4745 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4746 | pred = pred + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4747 | //ganrantee comporession error against the case of machine-epsilon |
---|
4748 | if(fabs(curData - pred)>tmp_realPrecision){ |
---|
4749 | type[index] = 0; |
---|
4750 | pred = curData; |
---|
4751 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4752 | } |
---|
4753 | } |
---|
4754 | else{ |
---|
4755 | type[index] = 0; |
---|
4756 | pred = curData; |
---|
4757 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
4758 | } |
---|
4759 | |
---|
4760 | if((jj == current_blockcount_y - 1) || (kk == current_blockcount_z - 1)){ |
---|
4761 | // assign value to block surfaces |
---|
4762 | pb_pos[ii * strip_dim0_offset + jj * strip_dim1_offset + kk] = pred; |
---|
4763 | } |
---|
4764 | // assign value to next prediction buffer |
---|
4765 | next_pb_pos[jj * strip_dim1_offset + kk] = pred; |
---|
4766 | index ++; |
---|
4767 | cur_data_pos ++; |
---|
4768 | } |
---|
4769 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
4770 | } |
---|
4771 | } |
---|
4772 | unpredictable_count = block_unpredictable_count; |
---|
4773 | strip_unpredictable_count += unpredictable_count; |
---|
4774 | unpredictable_data += unpredictable_count; |
---|
4775 | |
---|
4776 | reg_count ++; |
---|
4777 | } |
---|
4778 | else{ |
---|
4779 | // use SZ |
---|
4780 | // SZ predication |
---|
4781 | unpredictable_count = 0; |
---|
4782 | double * cur_pb_pos = pb_pos; |
---|
4783 | double * cur_data_pos = data_pos; |
---|
4784 | double curData; |
---|
4785 | double pred3D; |
---|
4786 | double itvNum, diff; |
---|
4787 | size_t index = 0; |
---|
4788 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
4789 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4790 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
4791 | |
---|
4792 | curData = *cur_data_pos; |
---|
4793 | if(fabs(curData - mean) <= realPrecision){ |
---|
4794 | // adjust type[index] to intvRadius for coherence with freq in reg |
---|
4795 | type[index] = intvRadius; |
---|
4796 | *cur_pb_pos = mean; |
---|
4797 | } |
---|
4798 | else |
---|
4799 | { |
---|
4800 | pred3D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim1_offset]+ cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim1_offset - 1] |
---|
4801 | - cur_pb_pos[-strip_dim0_offset - 1] - cur_pb_pos[-strip_dim0_offset - strip_dim1_offset] + cur_pb_pos[-strip_dim0_offset - strip_dim1_offset - 1]; |
---|
4802 | diff = curData - pred3D; |
---|
4803 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4804 | if (itvNum < intvCapacity_sz){ |
---|
4805 | if (diff < 0) itvNum = -itvNum; |
---|
4806 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4807 | *cur_pb_pos = pred3D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4808 | if(type[index] <= intvRadius) type[index] -= 1; |
---|
4809 | //ganrantee comporession error against the case of machine-epsilon |
---|
4810 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
4811 | type[index] = 0; |
---|
4812 | *cur_pb_pos = curData; |
---|
4813 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4814 | } |
---|
4815 | } |
---|
4816 | else{ |
---|
4817 | type[index] = 0; |
---|
4818 | *cur_pb_pos = curData; |
---|
4819 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4820 | } |
---|
4821 | } |
---|
4822 | index ++; |
---|
4823 | cur_pb_pos ++; |
---|
4824 | cur_data_pos ++; |
---|
4825 | } |
---|
4826 | cur_pb_pos += strip_dim1_offset - current_blockcount_z; |
---|
4827 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
4828 | } |
---|
4829 | cur_pb_pos += strip_dim0_offset - current_blockcount_y * strip_dim1_offset; |
---|
4830 | cur_data_pos += dim0_offset - current_blockcount_y * dim1_offset; |
---|
4831 | } |
---|
4832 | /*dealing with the last ii (boundary)*/ |
---|
4833 | { |
---|
4834 | // ii == current_blockcount_x - 1 |
---|
4835 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
4836 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
4837 | |
---|
4838 | curData = *cur_data_pos; |
---|
4839 | if(fabs(curData - mean) <= realPrecision){ |
---|
4840 | // adjust type[index] to intvRadius for coherence with freq in reg |
---|
4841 | type[index] = intvRadius; |
---|
4842 | *cur_pb_pos = mean; |
---|
4843 | } |
---|
4844 | else |
---|
4845 | { |
---|
4846 | pred3D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim1_offset]+ cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim1_offset - 1] |
---|
4847 | - cur_pb_pos[-strip_dim0_offset - 1] - cur_pb_pos[-strip_dim0_offset - strip_dim1_offset] + cur_pb_pos[-strip_dim0_offset - strip_dim1_offset - 1]; |
---|
4848 | diff = curData - pred3D; |
---|
4849 | itvNum = fabs(diff)/realPrecision + 1; |
---|
4850 | if (itvNum < intvCapacity_sz){ |
---|
4851 | if (diff < 0) itvNum = -itvNum; |
---|
4852 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
4853 | *cur_pb_pos = pred3D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
4854 | if(type[index] <= intvRadius) type[index] -= 1; |
---|
4855 | //ganrantee comporession error against the case of machine-epsilon |
---|
4856 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
4857 | type[index] = 0; |
---|
4858 | *cur_pb_pos = curData; |
---|
4859 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4860 | } |
---|
4861 | } |
---|
4862 | else{ |
---|
4863 | type[index] = 0; |
---|
4864 | *cur_pb_pos = curData; |
---|
4865 | unpredictable_data[unpredictable_count ++] = curData; |
---|
4866 | } |
---|
4867 | } |
---|
4868 | next_pb_pos[jj * strip_dim1_offset + kk] = *cur_pb_pos; |
---|
4869 | index ++; |
---|
4870 | cur_pb_pos ++; |
---|
4871 | cur_data_pos ++; |
---|
4872 | } |
---|
4873 | cur_pb_pos += strip_dim1_offset - current_blockcount_z; |
---|
4874 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
4875 | } |
---|
4876 | } |
---|
4877 | strip_unpredictable_count += unpredictable_count; |
---|
4878 | unpredictable_data += unpredictable_count; |
---|
4879 | // change indicator |
---|
4880 | indicator_pos[k] = 1; |
---|
4881 | }// end SZ |
---|
4882 | |
---|
4883 | reg_params_pos ++; |
---|
4884 | data_pos += current_blockcount_z; |
---|
4885 | pb_pos += current_blockcount_z; |
---|
4886 | next_pb_pos += current_blockcount_z; |
---|
4887 | type += current_blockcount_x * current_blockcount_y * current_blockcount_z; |
---|
4888 | |
---|
4889 | } // end k |
---|
4890 | |
---|
4891 | if(strip_unpredictable_count > max_unpred_count){ |
---|
4892 | max_unpred_count = strip_unpredictable_count; |
---|
4893 | } |
---|
4894 | total_unpred += strip_unpredictable_count; |
---|
4895 | indicator_pos += num_z; |
---|
4896 | }// end j |
---|
4897 | double * tmp; |
---|
4898 | tmp = cur_pb_buf; |
---|
4899 | cur_pb_buf = next_pb_buf; |
---|
4900 | next_pb_buf = tmp; |
---|
4901 | }// end i |
---|
4902 | } |
---|
4903 | else{ |
---|
4904 | int intvCapacity_sz = intvCapacity - 2; |
---|
4905 | for(size_t i=0; i<num_x; i++){ |
---|
4906 | current_blockcount_x = (i < split_index_x) ? early_blockcount_x : late_blockcount_x; |
---|
4907 | offset_x = (i < split_index_x) ? i * early_blockcount_x : i * late_blockcount_x + split_index_x; |
---|
4908 | |
---|
4909 | for(size_t j=0; j<num_y; j++){ |
---|
4910 | offset_y = (j < split_index_y) ? j * early_blockcount_y : j * late_blockcount_y + split_index_y; |
---|
4911 | current_blockcount_y = (j < split_index_y) ? early_blockcount_y : late_blockcount_y; |
---|
4912 | data_pos = oriData + offset_x * dim0_offset + offset_y * dim1_offset; |
---|
4913 | // copy bottom plane from plane buffer |
---|
4914 | // memcpy(prediction_buffer, bottom_buffer + offset_y * strip_dim1_offset, (current_blockcount_y + 1) * strip_dim1_offset * sizeof(double)); |
---|
4915 | type_offset = offset_x * dim0_offset + offset_y * current_blockcount_x * dim1_offset; |
---|
4916 | type = result_type + type_offset; |
---|
4917 | |
---|
4918 | // prediction buffer is (current_block_count_x + 1) * (current_block_count_y + 1) * (current_block_count_z + 1) |
---|
4919 | cur_pb_buf_pos = cur_pb_buf + offset_y * strip_dim1_offset + strip_dim0_offset + strip_dim1_offset + 1; |
---|
4920 | next_pb_buf_pos = next_pb_buf + offset_y * strip_dim1_offset + strip_dim1_offset + 1; |
---|
4921 | |
---|
4922 | size_t current_blockcount_z; |
---|
4923 | double * pb_pos = cur_pb_buf_pos; |
---|
4924 | double * next_pb_pos = next_pb_buf_pos; |
---|
4925 | size_t strip_unpredictable_count = 0; |
---|
4926 | for(size_t k=0; k<num_z; k++){ |
---|
4927 | current_blockcount_z = (k < split_index_z) ? early_blockcount_z : late_blockcount_z; |
---|
4928 | /*sampling*/ |
---|
4929 | { |
---|
4930 | // sample point [1, 1, 1] [1, 1, 4] [1, 4, 1] [1, 4, 4] [4, 1, 1] [4, 1, 4] [4, 4, 1] [4, 4, 4] |
---|
4931 | double * cur_data_pos; |
---|
4932 | double curData; |
---|
4933 | double pred_reg, pred_sz; |
---|
4934 | double err_sz = 0.0, err_reg = 0.0; |
---|
4935 | int bmi; |
---|
4936 | if(i>0 && j>0 && k>0){ |
---|
4937 | for(int i=0; i<block_size; i++){ |
---|
4938 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + i; |
---|
4939 | curData = *cur_data_pos; |
---|
4940 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4941 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4942 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4943 | err_reg += fabs(pred_reg - curData); |
---|
4944 | |
---|
4945 | bmi = block_size - i; |
---|
4946 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + bmi; |
---|
4947 | curData = *cur_data_pos; |
---|
4948 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4949 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4950 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4951 | err_reg += fabs(pred_reg - curData); |
---|
4952 | |
---|
4953 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + i; |
---|
4954 | curData = *cur_data_pos; |
---|
4955 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4956 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4957 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4958 | err_reg += fabs(pred_reg - curData); |
---|
4959 | |
---|
4960 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + bmi; |
---|
4961 | curData = *cur_data_pos; |
---|
4962 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4963 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4964 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4965 | err_reg += fabs(pred_reg - curData); |
---|
4966 | } |
---|
4967 | } |
---|
4968 | else{ |
---|
4969 | for(int i=1; i<block_size; i++){ |
---|
4970 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + i; |
---|
4971 | curData = *cur_data_pos; |
---|
4972 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4973 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4974 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4975 | err_reg += fabs(pred_reg - curData); |
---|
4976 | |
---|
4977 | bmi = block_size - i; |
---|
4978 | cur_data_pos = data_pos + i*dim0_offset + i*dim1_offset + bmi; |
---|
4979 | curData = *cur_data_pos; |
---|
4980 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4981 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * i + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4982 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4983 | err_reg += fabs(pred_reg - curData); |
---|
4984 | |
---|
4985 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + i; |
---|
4986 | curData = *cur_data_pos; |
---|
4987 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4988 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * i + reg_params_pos[params_offset_d]; |
---|
4989 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4990 | err_reg += fabs(pred_reg - curData); |
---|
4991 | |
---|
4992 | cur_data_pos = data_pos + i*dim0_offset + bmi*dim1_offset + bmi; |
---|
4993 | curData = *cur_data_pos; |
---|
4994 | pred_sz = cur_data_pos[-1] + cur_data_pos[-dim1_offset]+ cur_data_pos[-dim0_offset] - cur_data_pos[-dim1_offset - 1] - cur_data_pos[-dim0_offset - 1] - cur_data_pos[-dim0_offset - dim1_offset] + cur_data_pos[-dim0_offset - dim1_offset - 1]; |
---|
4995 | pred_reg = reg_params_pos[0] * i + reg_params_pos[params_offset_b] * bmi + reg_params_pos[params_offset_c] * bmi + reg_params_pos[params_offset_d]; |
---|
4996 | err_sz += fabs(pred_sz - curData) + noise; |
---|
4997 | err_reg += fabs(pred_reg - curData); |
---|
4998 | } |
---|
4999 | } |
---|
5000 | use_reg = (err_reg < err_sz); |
---|
5001 | |
---|
5002 | } |
---|
5003 | if(use_reg) |
---|
5004 | { |
---|
5005 | { |
---|
5006 | /*predict coefficients in current block via previous reg_block*/ |
---|
5007 | double cur_coeff; |
---|
5008 | double diff, itvNum; |
---|
5009 | for(int e=0; e<4; e++){ |
---|
5010 | cur_coeff = reg_params_pos[e*num_blocks]; |
---|
5011 | diff = cur_coeff - last_coeffcients[e]; |
---|
5012 | itvNum = fabs(diff)/precision[e] + 1; |
---|
5013 | if (itvNum < coeff_intvCapacity_sz){ |
---|
5014 | if (diff < 0) itvNum = -itvNum; |
---|
5015 | coeff_type[e][coeff_index] = (int) (itvNum/2) + coeff_intvRadius; |
---|
5016 | last_coeffcients[e] = last_coeffcients[e] + 2 * (coeff_type[e][coeff_index] - coeff_intvRadius) * precision[e]; |
---|
5017 | //ganrantee comporession error against the case of machine-epsilon |
---|
5018 | if(fabs(cur_coeff - last_coeffcients[e])>precision[e]){ |
---|
5019 | coeff_type[e][coeff_index] = 0; |
---|
5020 | last_coeffcients[e] = cur_coeff; |
---|
5021 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
5022 | } |
---|
5023 | } |
---|
5024 | else{ |
---|
5025 | coeff_type[e][coeff_index] = 0; |
---|
5026 | last_coeffcients[e] = cur_coeff; |
---|
5027 | coeff_unpred_data[e][coeff_unpredictable_count[e] ++] = cur_coeff; |
---|
5028 | } |
---|
5029 | } |
---|
5030 | coeff_index ++; |
---|
5031 | } |
---|
5032 | double curData; |
---|
5033 | double pred; |
---|
5034 | double itvNum; |
---|
5035 | double diff; |
---|
5036 | size_t index = 0; |
---|
5037 | size_t block_unpredictable_count = 0; |
---|
5038 | double * cur_data_pos = data_pos; |
---|
5039 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
5040 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
5041 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
5042 | |
---|
5043 | curData = *cur_data_pos; |
---|
5044 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2] * kk + last_coeffcients[3]; |
---|
5045 | diff = curData - pred; |
---|
5046 | itvNum = fabs(diff)/tmp_realPrecision + 1; |
---|
5047 | if (itvNum < intvCapacity){ |
---|
5048 | if (diff < 0) itvNum = -itvNum; |
---|
5049 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
5050 | pred = pred + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
5051 | //ganrantee comporession error against the case of machine-epsilon |
---|
5052 | if(fabs(curData - pred)>tmp_realPrecision){ |
---|
5053 | type[index] = 0; |
---|
5054 | pred = curData; |
---|
5055 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
5056 | } |
---|
5057 | } |
---|
5058 | else{ |
---|
5059 | type[index] = 0; |
---|
5060 | pred = curData; |
---|
5061 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
5062 | } |
---|
5063 | |
---|
5064 | if((jj == current_blockcount_y - 1) || (kk == current_blockcount_z - 1)){ |
---|
5065 | // assign value to block surfaces |
---|
5066 | pb_pos[ii * strip_dim0_offset + jj * strip_dim1_offset + kk] = pred; |
---|
5067 | } |
---|
5068 | index ++; |
---|
5069 | cur_data_pos ++; |
---|
5070 | } |
---|
5071 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
5072 | } |
---|
5073 | cur_data_pos += dim0_offset - current_blockcount_y * dim1_offset; |
---|
5074 | } |
---|
5075 | /*dealing with the last ii (boundary)*/ |
---|
5076 | { |
---|
5077 | // ii == current_blockcount_x - 1 |
---|
5078 | size_t ii = current_blockcount_x - 1; |
---|
5079 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
5080 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
5081 | curData = *cur_data_pos; |
---|
5082 | pred = last_coeffcients[0] * ii + last_coeffcients[1] * jj + last_coeffcients[2] * kk + last_coeffcients[3]; |
---|
5083 | diff = curData - pred; |
---|
5084 | itvNum = fabs(diff)/tmp_realPrecision + 1; |
---|
5085 | if (itvNum < intvCapacity){ |
---|
5086 | if (diff < 0) itvNum = -itvNum; |
---|
5087 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
5088 | pred = pred + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
5089 | //ganrantee comporession error against the case of machine-epsilon |
---|
5090 | if(fabs(curData - pred)>tmp_realPrecision){ |
---|
5091 | type[index] = 0; |
---|
5092 | pred = curData; |
---|
5093 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
5094 | } |
---|
5095 | } |
---|
5096 | else{ |
---|
5097 | type[index] = 0; |
---|
5098 | pred = curData; |
---|
5099 | unpredictable_data[block_unpredictable_count ++] = curData; |
---|
5100 | } |
---|
5101 | |
---|
5102 | if((jj == current_blockcount_y - 1) || (kk == current_blockcount_z - 1)){ |
---|
5103 | // assign value to block surfaces |
---|
5104 | pb_pos[ii * strip_dim0_offset + jj * strip_dim1_offset + kk] = pred; |
---|
5105 | } |
---|
5106 | // assign value to next prediction buffer |
---|
5107 | next_pb_pos[jj * strip_dim1_offset + kk] = pred; |
---|
5108 | index ++; |
---|
5109 | cur_data_pos ++; |
---|
5110 | } |
---|
5111 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
5112 | } |
---|
5113 | } |
---|
5114 | unpredictable_count = block_unpredictable_count; |
---|
5115 | strip_unpredictable_count += unpredictable_count; |
---|
5116 | unpredictable_data += unpredictable_count; |
---|
5117 | reg_count ++; |
---|
5118 | } |
---|
5119 | else{ |
---|
5120 | // use SZ |
---|
5121 | // SZ predication |
---|
5122 | unpredictable_count = 0; |
---|
5123 | double * cur_pb_pos = pb_pos; |
---|
5124 | double * cur_data_pos = data_pos; |
---|
5125 | double curData; |
---|
5126 | double pred3D; |
---|
5127 | double itvNum, diff; |
---|
5128 | size_t index = 0; |
---|
5129 | for(size_t ii=0; ii<current_blockcount_x - 1; ii++){ |
---|
5130 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
5131 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
5132 | |
---|
5133 | curData = *cur_data_pos; |
---|
5134 | pred3D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim1_offset]+ cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim1_offset - 1] |
---|
5135 | - cur_pb_pos[-strip_dim0_offset - 1] - cur_pb_pos[-strip_dim0_offset - strip_dim1_offset] + cur_pb_pos[-strip_dim0_offset - strip_dim1_offset - 1]; |
---|
5136 | diff = curData - pred3D; |
---|
5137 | itvNum = fabs(diff)/realPrecision + 1; |
---|
5138 | if (itvNum < intvCapacity_sz){ |
---|
5139 | if (diff < 0) itvNum = -itvNum; |
---|
5140 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
5141 | *cur_pb_pos = pred3D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
5142 | //ganrantee comporession error against the case of machine-epsilon |
---|
5143 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
5144 | type[index] = 0; |
---|
5145 | *cur_pb_pos = curData; |
---|
5146 | unpredictable_data[unpredictable_count ++] = curData; |
---|
5147 | } |
---|
5148 | } |
---|
5149 | else{ |
---|
5150 | type[index] = 0; |
---|
5151 | *cur_pb_pos = curData; |
---|
5152 | unpredictable_data[unpredictable_count ++] = curData; |
---|
5153 | } |
---|
5154 | index ++; |
---|
5155 | cur_pb_pos ++; |
---|
5156 | cur_data_pos ++; |
---|
5157 | } |
---|
5158 | cur_pb_pos += strip_dim1_offset - current_blockcount_z; |
---|
5159 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
5160 | } |
---|
5161 | cur_pb_pos += strip_dim0_offset - current_blockcount_y * strip_dim1_offset; |
---|
5162 | cur_data_pos += dim0_offset - current_blockcount_y * dim1_offset; |
---|
5163 | } |
---|
5164 | /*dealing with the last ii (boundary)*/ |
---|
5165 | { |
---|
5166 | // ii == current_blockcount_x - 1 |
---|
5167 | for(size_t jj=0; jj<current_blockcount_y; jj++){ |
---|
5168 | for(size_t kk=0; kk<current_blockcount_z; kk++){ |
---|
5169 | |
---|
5170 | curData = *cur_data_pos; |
---|
5171 | pred3D = cur_pb_pos[-1] + cur_pb_pos[-strip_dim1_offset]+ cur_pb_pos[-strip_dim0_offset] - cur_pb_pos[-strip_dim1_offset - 1] |
---|
5172 | - cur_pb_pos[-strip_dim0_offset - 1] - cur_pb_pos[-strip_dim0_offset - strip_dim1_offset] + cur_pb_pos[-strip_dim0_offset - strip_dim1_offset - 1]; |
---|
5173 | diff = curData - pred3D; |
---|
5174 | itvNum = fabs(diff)/realPrecision + 1; |
---|
5175 | if (itvNum < intvCapacity_sz){ |
---|
5176 | if (diff < 0) itvNum = -itvNum; |
---|
5177 | type[index] = (int) (itvNum/2) + intvRadius; |
---|
5178 | *cur_pb_pos = pred3D + 2 * (type[index] - intvRadius) * tmp_realPrecision; |
---|
5179 | //ganrantee comporession error against the case of machine-epsilon |
---|
5180 | if(fabs(curData - *cur_pb_pos)>tmp_realPrecision){ |
---|
5181 | type[index] = 0; |
---|
5182 | *cur_pb_pos = curData; |
---|
5183 | unpredictable_data[unpredictable_count ++] = curData; |
---|
5184 | } |
---|
5185 | } |
---|
5186 | else{ |
---|
5187 | type[index] = 0; |
---|
5188 | *cur_pb_pos = curData; |
---|
5189 | unpredictable_data[unpredictable_count ++] = curData; |
---|
5190 | } |
---|
5191 | // assign value to next prediction buffer |
---|
5192 | next_pb_pos[jj * strip_dim1_offset + kk] = *cur_pb_pos; |
---|
5193 | index ++; |
---|
5194 | cur_pb_pos ++; |
---|
5195 | cur_data_pos ++; |
---|
5196 | } |
---|
5197 | cur_pb_pos += strip_dim1_offset - current_blockcount_z; |
---|
5198 | cur_data_pos += dim1_offset - current_blockcount_z; |
---|
5199 | } |
---|
5200 | } |
---|
5201 | strip_unpredictable_count += unpredictable_count; |
---|
5202 | unpredictable_data += unpredictable_count; |
---|
5203 | // change indicator |
---|
5204 | indicator_pos[k] = 1; |
---|
5205 | }// end SZ |
---|
5206 | |
---|
5207 | reg_params_pos ++; |
---|
5208 | data_pos += current_blockcount_z; |
---|
5209 | pb_pos += current_blockcount_z; |
---|
5210 | next_pb_pos += current_blockcount_z; |
---|
5211 | type += current_blockcount_x * current_blockcount_y * current_blockcount_z; |
---|
5212 | |
---|
5213 | } |
---|
5214 | |
---|
5215 | if(strip_unpredictable_count > max_unpred_count){ |
---|
5216 | max_unpred_count = strip_unpredictable_count; |
---|
5217 | } |
---|
5218 | total_unpred += strip_unpredictable_count; |
---|
5219 | indicator_pos += num_z; |
---|
5220 | } |
---|
5221 | double * tmp; |
---|
5222 | tmp = cur_pb_buf; |
---|
5223 | cur_pb_buf = next_pb_buf; |
---|
5224 | next_pb_buf = tmp; |
---|
5225 | } |
---|
5226 | } |
---|
5227 | |
---|
5228 | free(prediction_buffer_1); |
---|
5229 | free(prediction_buffer_2); |
---|
5230 | |
---|
5231 | int stateNum = 2*quantization_intervals; |
---|
5232 | HuffmanTree* huffmanTree = createHuffmanTree(stateNum); |
---|
5233 | |
---|
5234 | size_t nodeCount = 0; |
---|
5235 | init(huffmanTree, result_type, num_elements); |
---|
5236 | size_t i = 0; |
---|
5237 | for (i = 0; i < huffmanTree->stateNum; i++) |
---|
5238 | if (huffmanTree->code[i]) nodeCount++; |
---|
5239 | nodeCount = nodeCount*2-1; |
---|
5240 | |
---|
5241 | unsigned char *treeBytes; |
---|
5242 | unsigned int treeByteSize = convert_HuffTree_to_bytes_anyStates(huffmanTree, nodeCount, &treeBytes); |
---|
5243 | |
---|
5244 | unsigned int meta_data_offset = 3 + 1 + MetaDataByteLength; |
---|
5245 | // total size metadata # elements real precision intervals nodeCount huffman block index unpredicatable count mean unpred size elements |
---|
5246 | unsigned char * result = (unsigned char *) calloc(meta_data_offset + exe_params->SZ_SIZE_TYPE + sizeof(double) + sizeof(int) + sizeof(int) + treeByteSize + num_blocks * sizeof(unsigned short) + num_blocks * sizeof(unsigned short) + num_blocks * sizeof(double) + total_unpred * sizeof(double) + num_elements * sizeof(int), 1); |
---|
5247 | unsigned char * result_pos = result; |
---|
5248 | initRandomAccessBytes(result_pos); |
---|
5249 | |
---|
5250 | result_pos += meta_data_offset; |
---|
5251 | |
---|
5252 | sizeToBytes(result_pos,num_elements); //SZ_SIZE_TYPE: 4 or 8 |
---|
5253 | result_pos += exe_params->SZ_SIZE_TYPE; |
---|
5254 | |
---|
5255 | intToBytes_bigEndian(result_pos, block_size); |
---|
5256 | result_pos += sizeof(int); |
---|
5257 | doubleToBytes(result_pos, realPrecision); |
---|
5258 | result_pos += sizeof(double); |
---|
5259 | intToBytes_bigEndian(result_pos, quantization_intervals); |
---|
5260 | result_pos += sizeof(int); |
---|
5261 | intToBytes_bigEndian(result_pos, treeByteSize); |
---|
5262 | result_pos += sizeof(int); |
---|
5263 | intToBytes_bigEndian(result_pos, nodeCount); |
---|
5264 | result_pos += sizeof(int); |
---|
5265 | memcpy(result_pos, treeBytes, treeByteSize); |
---|
5266 | result_pos += treeByteSize; |
---|
5267 | free(treeBytes); |
---|
5268 | |
---|
5269 | memcpy(result_pos, &use_mean, sizeof(unsigned char)); |
---|
5270 | result_pos += sizeof(unsigned char); |
---|
5271 | memcpy(result_pos, &mean, sizeof(double)); |
---|
5272 | result_pos += sizeof(double); |
---|
5273 | size_t indicator_size = convertIntArray2ByteArray_fast_1b_to_result(indicator, num_blocks, result_pos); |
---|
5274 | result_pos += indicator_size; |
---|
5275 | |
---|
5276 | //convert the lead/mid/resi to byte stream |
---|
5277 | if(reg_count > 0){ |
---|
5278 | for(int e=0; e<4; e++){ |
---|
5279 | int stateNum = 2*coeff_intvCapacity_sz; |
---|
5280 | HuffmanTree* huffmanTree = createHuffmanTree(stateNum); |
---|
5281 | size_t nodeCount = 0; |
---|
5282 | init(huffmanTree, coeff_type[e], reg_count); |
---|
5283 | size_t i = 0; |
---|
5284 | for (i = 0; i < huffmanTree->stateNum; i++) |
---|
5285 | if (huffmanTree->code[i]) nodeCount++; |
---|
5286 | nodeCount = nodeCount*2-1; |
---|
5287 | unsigned char *treeBytes; |
---|
5288 | unsigned int treeByteSize = convert_HuffTree_to_bytes_anyStates(huffmanTree, nodeCount, &treeBytes); |
---|
5289 | doubleToBytes(result_pos, precision[e]); |
---|
5290 | result_pos += sizeof(double); |
---|
5291 | intToBytes_bigEndian(result_pos, coeff_intvRadius); |
---|
5292 | result_pos += sizeof(int); |
---|
5293 | intToBytes_bigEndian(result_pos, treeByteSize); |
---|
5294 | result_pos += sizeof(int); |
---|
5295 | intToBytes_bigEndian(result_pos, nodeCount); |
---|
5296 | result_pos += sizeof(int); |
---|
5297 | memcpy(result_pos, treeBytes, treeByteSize); |
---|
5298 | result_pos += treeByteSize; |
---|
5299 | free(treeBytes); |
---|
5300 | size_t typeArray_size = 0; |
---|
5301 | encode(huffmanTree, coeff_type[e], reg_count, result_pos + sizeof(size_t), &typeArray_size); |
---|
5302 | sizeToBytes(result_pos, typeArray_size); |
---|
5303 | result_pos += sizeof(size_t) + typeArray_size; |
---|
5304 | intToBytes_bigEndian(result_pos, coeff_unpredictable_count[e]); |
---|
5305 | result_pos += sizeof(int); |
---|
5306 | memcpy(result_pos, coeff_unpred_data[e], coeff_unpredictable_count[e]*sizeof(double)); |
---|
5307 | result_pos += coeff_unpredictable_count[e]*sizeof(double); |
---|
5308 | SZ_ReleaseHuffman(huffmanTree); |
---|
5309 | } |
---|
5310 | } |
---|
5311 | free(coeff_result_type); |
---|
5312 | free(coeff_unpredictable_data); |
---|
5313 | |
---|
5314 | //record the number of unpredictable data and also store them |
---|
5315 | memcpy(result_pos, &total_unpred, sizeof(size_t)); |
---|
5316 | result_pos += sizeof(size_t); |
---|
5317 | memcpy(result_pos, result_unpredictable_data, total_unpred * sizeof(double)); |
---|
5318 | result_pos += total_unpred * sizeof(double); |
---|
5319 | size_t typeArray_size = 0; |
---|
5320 | encode(huffmanTree, result_type, num_elements, result_pos, &typeArray_size); |
---|
5321 | result_pos += typeArray_size; |
---|
5322 | size_t totalEncodeSize = result_pos - result; |
---|
5323 | free(indicator); |
---|
5324 | free(result_unpredictable_data); |
---|
5325 | free(result_type); |
---|
5326 | free(reg_params); |
---|
5327 | |
---|
5328 | |
---|
5329 | SZ_ReleaseHuffman(huffmanTree); |
---|
5330 | *comp_size = totalEncodeSize; |
---|
5331 | return result; |
---|
5332 | } |
---|